Basic Information | |
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Species | Carica papaya |
Cazyme ID | evm.model.supercontig_106.44 |
Family | GH10 |
Protein Properties | Length: 575 Molecular Weight: 65031.7 Isoelectric Point: 6.5181 |
Chromosome | Chromosome/Scaffold: 106 Start: 567217 End: 570120 |
Description | Glycosyl hydrolase superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH10 | 222 | 482 | 0 |
VKSDFPFGCGMNYHILTSQDYRDWFSSRFRFSSFTNEMKWYSTEKKPGEENYTIPDAMMSFCRENDIFVRGHNILWDNPKMQPSWVKNLPSDELLVAAIR RTNSVVSRYKGQLICWDVMNENLHFRFYEDKLGENASAIFYSLAYGLDSYTSMFMNEYNTIELGKDASSTPIKYKEKIQQLLSYPEVKGMLAGIGLQGHF NDEQPNIPYIRTALDILGTTGVPIWLTEVDVEKNPNQAEYLEEILREAYSHPAVEGIIIFG |
Full Sequence |
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Protein Sequence Length: 575 Download |
MKIFTLLVFC IFLSSGDSTS TFSYDHSATA ECLKELERVQ YKGGIVYNPE FNYGLEGWTE 60 SGGGAKREVR SKGGNKFIVL HDRTKSFDSL LHNVQLQKSN IYSFSAWVQT NKGTETIAVV 120 FRTPSGGEII GGRIEAKHGC WSLLKGGMVA NFSGSVDVLL KTKHKAVDIW VDNVSLQPFT 180 PQQWRSNQEK IIDKIRKSKV RFRVSTVNGT IVEGAEISIN QVKSDFPFGC GMNYHILTSQ 240 DYRDWFSSRF RFSSFTNEMK WYSTEKKPGE ENYTIPDAMM SFCRENDIFV RGHNILWDNP 300 KMQPSWVKNL PSDELLVAAI RRTNSVVSRY KGQLICWDVM NENLHFRFYE DKLGENASAI 360 FYSLAYGLDS YTSMFMNEYN TIELGKDASS TPIKYKEKIQ QLLSYPEVKG MLAGIGLQGH 420 FNDEQPNIPY IRTALDILGT TGVPIWLTEV DVEKNPNQAE YLEEILREAY SHPAVEGIII 480 FGGPIVAGFS NMTLADENFM NTPTGDVVDQ LIKEWRTENQ TALADNQGFC EINLFHGDYK 540 VTVKHPLTNI SSAFDLRVTK QIPRQSVNIQ IGNI* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam02018 | CBM_4_9 | 0.003 | 43 | 119 | 82 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
COG3693 | XynA | 6.0e-27 | 257 | 471 | 225 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
pfam00331 | Glyco_hydro_10 | 8.0e-41 | 218 | 482 | 284 | + Glycosyl hydrolase family 10. | ||
smart00633 | Glyco_10 | 5.0e-73 | 259 | 508 | 272 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
GO:0016798 | hydrolase activity, acting on glycosyl bonds |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACU19437.1 | 0 | 6 | 571 | 12 | 579 | unknown [Glycine max] |
RefSeq | XP_002313181.1 | 0 | 21 | 571 | 22 | 573 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002313182.1 | 0 | 31 | 560 | 4 | 533 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002532419.1 | 0 | 32 | 560 | 8 | 536 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
RefSeq | XP_002532422.1 | 0 | 31 | 571 | 22 | 562 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1i1x_A | 2e-18 | 228 | 452 | 18 | 240 | A Chain A, Crystal Structure Of 1,2-A-L-Fucosidase From Bifidobacterium Bifidum (Apo Form) |
PDB | 1i1w_A | 2e-18 | 228 | 452 | 18 | 240 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
PDB | 1nq6_A | 2e-18 | 228 | 482 | 15 | 269 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
PDB | 3emz_A | 2e-18 | 228 | 452 | 15 | 243 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
PDB | 3emq_A | 2e-18 | 228 | 452 | 15 | 243 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
ES830806 | 292 | 108 | 397 | 0 |
ES843603 | 250 | 263 | 512 | 0 |
DV141191 | 250 | 217 | 466 | 0 |
GR712482 | 262 | 309 | 570 | 0 |
CV887102 | 262 | 310 | 571 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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