Basic Information | |
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Species | Carica papaya |
Cazyme ID | evm.model.supercontig_107.107 |
Family | GH28 |
Protein Properties | Length: 468 Molecular Weight: 51440.7 Isoelectric Point: 6.6154 |
Chromosome | Chromosome/Scaffold: 107 Start: 575950 End: 578224 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 80 | 426 | 0 |
GGAQLIVPPGKWLTGSFNLTSHFTLFIQQGAVILASQDESEWPLLPPLPSYGRGRDAPGDRFSSLIFGTNLTDVIITGNNGTIDGQGESWWKKFRNGELH NTRPYLIEIMHSDRVQISDITLINSPSWNVHPVYSSNVLVQRLTILAPIDSPNTDGIDPDSCTNTRIEDCYIVSGDDCIAVKSGWDQYGIKFGMPTEKLI IRRLTCISPDSATIALGSEMSGGIKDVRAEDIIAINTQSGIRIKTAIGRGAYVRDIFVRRMNMKTMKYVFWMSGSYNQHPDPGFDPKAFPKIENINYKDV RAENVTYSARLEGIPQDPFTGVCISNVSINLTEKPKELQWNCTNIAG |
Full Sequence |
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Protein Sequence Length: 468 Download |
MSSINIVQIV VGVLVLGLFD SRTAQCRPSR VLESIEYSAL SCRKHTASLT DFGGVPDGKT 60 SNTKAFKVAI DKLSSLAGDG GAQLIVPPGK WLTGSFNLTS HFTLFIQQGA VILASQDESE 120 WPLLPPLPSY GRGRDAPGDR FSSLIFGTNL TDVIITGNNG TIDGQGESWW KKFRNGELHN 180 TRPYLIEIMH SDRVQISDIT LINSPSWNVH PVYSSNVLVQ RLTILAPIDS PNTDGIDPDS 240 CTNTRIEDCY IVSGDDCIAV KSGWDQYGIK FGMPTEKLII RRLTCISPDS ATIALGSEMS 300 GGIKDVRAED IIAINTQSGI RIKTAIGRGA YVRDIFVRRM NMKTMKYVFW MSGSYNQHPD 360 PGFDPKAFPK IENINYKDVR AENVTYSARL EGIPQDPFTG VCISNVSINL TEKPKELQWN 420 CTNIAGVTSH VNPKACNLLP EKEEPINCPF PNDRLPIEDI SIQKCKI* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 3.0e-18 | 45 | 324 | 286 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02218 | PLN02218 | 5.0e-24 | 46 | 408 | 372 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 4.0e-25 | 49 | 335 | 296 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 3.0e-27 | 145 | 436 | 302 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 9.0e-53 | 47 | 343 | 320 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACU17976.1 | 0 | 1 | 467 | 7 | 471 | unknown [Glycine max] |
RefSeq | XP_002273669.1 | 0 | 9 | 465 | 15 | 468 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002327490.1 | 0 | 34 | 465 | 19 | 448 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002509850.1 | 0 | 20 | 465 | 31 | 473 | polygalacturonase, putative [Ricinus communis] |
RefSeq | XP_002513653.1 | 0 | 6 | 465 | 12 | 469 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 47 | 408 | 28 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 47 | 408 | 28 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 47 | 408 | 28 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0 | 47 | 408 | 28 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 3e-16 | 91 | 382 | 52 | 336 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DY257045 | 327 | 90 | 416 | 0 |
DY294251 | 413 | 37 | 445 | 0 |
FC906391 | 300 | 37 | 336 | 0 |
EL471087 | 306 | 65 | 369 | 0 |
EB679225 | 301 | 81 | 381 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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