Basic Information | |
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Species | Carica papaya |
Cazyme ID | evm.model.supercontig_107.108 |
Family | GH28 |
Protein Properties | Length: 473 Molecular Weight: 51232.6 Isoelectric Point: 5.8965 |
Chromosome | Chromosome/Scaffold: 107 Start: 578727 End: 580772 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 87 | 431 | 0 |
GGAQLVVPPGKWLTGSFNLTSHFTLFIQQGATLLASQDESGWPLLPALPSYGDKSSPGRYSSLIYGTNLTDVIITGNNGTIDGQGKPWWEKYKKGEFKNT RPCLIEIVYSDHVQISNVTLIDSPAWNVHPVYSSNILIQGVTILAPIDSENTDGINPDSCTNTRIEDCFVVSADDCVAVKSGIDQFGIKFGMPTQQLIIR RLACISPRSAAIALGSEMSGGVKDVRAEDIVAINTESGVRIKTAIGRGGYVKDIFVRRMTLKTMKYVFWMAGDYKSHPSPGFDPHALPKIENINYNDITA ENVTLSASLEGIQQDPFAGICISNAEIGLSEKAKKLQWDCSDVAG |
Full Sequence |
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Protein Sequence Length: 473 Download |
MELVGIKHQN FHITEILFGV LVLGFLNLRT VQCGSDKNLQ GIEYSALSCR KHTASLVDFG 60 GVPDGKTSNT KAFKAAIDKL STLAGDGGAQ LVVPPGKWLT GSFNLTSHFT LFIQQGATLL 120 ASQDESGWPL LPALPSYGDK SSPGRYSSLI YGTNLTDVII TGNNGTIDGQ GKPWWEKYKK 180 GEFKNTRPCL IEIVYSDHVQ ISNVTLIDSP AWNVHPVYSS NILIQGVTIL APIDSENTDG 240 INPDSCTNTR IEDCFVVSAD DCVAVKSGID QFGIKFGMPT QQLIIRRLAC ISPRSAAIAL 300 GSEMSGGVKD VRAEDIVAIN TESGVRIKTA IGRGGYVKDI FVRRMTLKTM KYVFWMAGDY 360 KSHPSPGFDP HALPKIENIN YNDITAENVT LSASLEGIQQ DPFAGICISN AEIGLSEKAK 420 KLQWDCSDVA GVTSRVTPKA CTLLPEKEQP MDCPFPDDKL PIEDIPLQKC TI* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 8.0e-19 | 58 | 441 | 402 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 5.0e-24 | 56 | 351 | 305 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 2.0e-24 | 53 | 413 | 370 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 6.0e-27 | 89 | 386 | 305 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 1.0e-57 | 54 | 348 | 321 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACU17976.1 | 0 | 7 | 472 | 6 | 471 | unknown [Glycine max] |
RefSeq | NP_190464.1 | 0 | 18 | 470 | 6 | 467 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002273669.1 | 0 | 12 | 471 | 11 | 469 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002509850.1 | 0 | 39 | 471 | 38 | 474 | polygalacturonase, putative [Ricinus communis] |
RefSeq | XP_002513653.1 | 0 | 7 | 471 | 9 | 470 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 1.4013e-45 | 52 | 413 | 26 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 1.4013e-45 | 52 | 413 | 26 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 1.4013e-45 | 52 | 413 | 26 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 1.4013e-45 | 52 | 413 | 26 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 2uvf_B | 6e-17 | 48 | 394 | 151 | 532 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DY257045 | 327 | 97 | 421 | 0 |
FC906391 | 300 | 44 | 341 | 0 |
DY294251 | 300 | 44 | 341 | 0 |
DY294251 | 55 | 341 | 395 | 0.0000000000009 |
DY294251 | 56 | 398 | 450 | 0.0000000000009 |
Sequence Alignments (This image is cropped. Click for full image.) |
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