Basic Information | |
---|---|
Species | Carica papaya |
Cazyme ID | evm.model.supercontig_108.28 |
Family | GH28 |
Protein Properties | Length: 472 Molecular Weight: 50240.4 Isoelectric Point: 6.7627 |
Chromosome | Chromosome/Scaffold: 108 Start: 300927 End: 304070 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 92 | 431 | 0 |
AAACKVEASTMVVPSGSVFLVGPASFSGPNCARNIVFQLDGKIIAPTSSGAWGSSLLQWIEFAKLQGITVTGKGIIDGQGSVWWNDLPTDRPEHKPESTE SSYDPLNGELSSKMPGNKPTALRFYGSTRVTVTGITIQNSPQTHLKFDDCTGIQVSGFTASSPGNSPNTDGIHLQNSQDVDIHSSTLACGDDCVSIQTGC SNVNIHNVECGPGHGISIGGLGRDNTKACVSNVTVRDVTMHNTLSGVRIKTWQGGSGSVRQVMFSNVQVNEVEIPIVIDQYYCDKGTCHNQSSAVAVSDI NYISIRGTYTRKPVHFACSDSLPCTGVSLSTIQLKPVQEN |
Full Sequence |
---|
Protein Sequence Length: 472 Download |
MARSIFIDIK ILNILIALLL LFSSFGTSNG RHWRQLSGRD EIVSVFKNKE KGGISAPATQ 60 GGKYSSTFNV LDYGAKGDGH SDDTKAFEAC WAAACKVEAS TMVVPSGSVF LVGPASFSGP 120 NCARNIVFQL DGKIIAPTSS GAWGSSLLQW IEFAKLQGIT VTGKGIIDGQ GSVWWNDLPT 180 DRPEHKPEST ESSYDPLNGE LSSKMPGNKP TALRFYGSTR VTVTGITIQN SPQTHLKFDD 240 CTGIQVSGFT ASSPGNSPNT DGIHLQNSQD VDIHSSTLAC GDDCVSIQTG CSNVNIHNVE 300 CGPGHGISIG GLGRDNTKAC VSNVTVRDVT MHNTLSGVRI KTWQGGSGSV RQVMFSNVQV 360 NEVEIPIVID QYYCDKGTCH NQSSAVAVSD INYISIRGTY TRKPVHFACS DSLPCTGVSL 420 STIQLKPVQE NQGPFCWEAY GELKTTTVPP ISCLETGRPS KAGIHSTSDS C* 480 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 6.0e-71 | 64 | 425 | 367 | + polygalacturonase | ||
PLN02188 | PLN02188 | 7.0e-73 | 61 | 426 | 376 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 4.0e-73 | 99 | 425 | 328 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 5.0e-74 | 66 | 426 | 365 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 3.0e-91 | 68 | 468 | 409 | + Probable polygalacturonase |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAD46483.1 | 0 | 12 | 471 | 13 | 443 | polygalacturonase PG1 [Glycine max] |
GenBank | ABW76153.1 | 0 | 65 | 471 | 70 | 483 | polygalacturonase [Vitis vinifera] |
EMBL | CBI34901.1 | 0 | 65 | 471 | 70 | 483 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002276805.1 | 0 | 65 | 471 | 70 | 492 | PREDICTED: polygalacturonase [Vitis vinifera] |
RefSeq | XP_002521450.1 | 0 | 22 | 464 | 25 | 463 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 3e-23 | 161 | 429 | 113 | 373 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 3e-20 | 159 | 411 | 72 | 305 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 3e-20 | 159 | 411 | 72 | 305 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 3e-20 | 159 | 411 | 72 | 305 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 3e-20 | 159 | 411 | 72 | 305 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
---|---|---|---|
Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |