| Basic Information | |
|---|---|
| Species | Carica papaya |
| Cazyme ID | evm.model.supercontig_1124.1 |
| Family | GH28 |
| Protein Properties | Length: 98 Molecular Weight: 10658 Isoelectric Point: 4.9187 |
| Chromosome | Chromosome/Scaffold: 1124 Start: 23 End: 426 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 1 | 85 | 6.2e-23 |
| MQNVENPIIIDQNYCPHNKNCPNQVSGVKIKDVTYQDIQGTSATSIAIKFDCSSSHPCTGIRVQNVKLTYFDEVAESSCTNIDGK | |||
| Full Sequence |
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| Protein Sequence Length: 98 Download |
| MQNVENPIII DQNYCPHNKN CPNQVSGVKI KDVTYQDIQG TSATSIAIKF DCSSSHPCTG 60 IRVQNVKLTY FDEVAESSCT NIDGKSFGLV IPIVDCF* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-22 | 1 | 82 | 82 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 6.0e-23 | 1 | 92 | 94 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02793 | PLN02793 | 5.0e-23 | 1 | 92 | 93 | + Probable polygalacturonase | ||
| PLN02155 | PLN02155 | 2.0e-31 | 1 | 92 | 93 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABQ45847.1 | 1e-37 | 1 | 92 | 115 | 206 | polygalacturonase [Citrus unshiu] |
| EMBL | CAN68142.1 | 2e-37 | 1 | 92 | 294 | 385 | hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002279845.1 | 2e-37 | 1 | 92 | 289 | 380 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002331659.1 | 7e-37 | 1 | 92 | 294 | 385 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002334853.1 | 5e-37 | 1 | 92 | 199 | 290 | predicted protein [Populus trichocarpa] |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| EC992079 | 92 | 1 | 92 | 2e-39 |
| EC992812 | 92 | 1 | 92 | 2e-39 |
| EC981185 | 92 | 1 | 92 | 2e-39 |
| EC946744 | 92 | 1 | 92 | 4e-38 |
| EC980995 | 92 | 1 | 92 | 1e-37 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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