| Basic Information | |
|---|---|
| Species | Carica papaya |
| Cazyme ID | evm.model.supercontig_12.174 |
| Family | CE8 |
| Protein Properties | Length: 362 Molecular Weight: 40000 Isoelectric Point: 8.2617 |
| Chromosome | Chromosome/Scaffold: 12 Start: 1563645 End: 1565482 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 63 | 355 | 0 |
| IVVDKNGGGDSVTVQGAVNMVPNNNKQRVKIFILPGIYREKVIVPNLKPYISFIGNENKVFETIISWNNKASDKDSNGAQLGTYKSASVTIESDYFAATG ITFENTIVADNKGLGMQAVALRLSGDKALLYKIRVVGTQDTLLDESGSHYFYQSYIQGSIDFIFGRARSLYQGCILHSTAKRSGAIAAHHRDSADENTGF SFVDSEISGTGKIYLGRAWGNYSRVVYANCYIDDIINPQGWSDWNNPSRQKTTVFGEYGCTGGGADRRYRVPWSKNLTYNEVKPFLDTKFIDG | |||
| Full Sequence |
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| Protein Sequence Length: 362 Download |
| MGNFFVSAFL VLATLAFPGG FQKSLCQGEV NQPKDFISWD DLKVNEQMAR LSSGDSFNES 60 RVIVVDKNGG GDSVTVQGAV NMVPNNNKQR VKIFILPGIY REKVIVPNLK PYISFIGNEN 120 KVFETIISWN NKASDKDSNG AQLGTYKSAS VTIESDYFAA TGITFENTIV ADNKGLGMQA 180 VALRLSGDKA LLYKIRVVGT QDTLLDESGS HYFYQSYIQG SIDFIFGRAR SLYQGCILHS 240 TAKRSGAIAA HHRDSADENT GFSFVDSEIS GTGKIYLGRA WGNYSRVVYA NCYIDDIINP 300 QGWSDWNNPS RQKTTVFGEY GCTGGGADRR YRVPWSKNLT YNEVKPFLDT KFIDGGMWLR 360 L* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02665 | PLN02665 | 3.0e-100 | 61 | 359 | 302 | + pectinesterase family protein | ||
| PLN02432 | PLN02432 | 2.0e-100 | 51 | 360 | 310 | + putative pectinesterase | ||
| PLN02634 | PLN02634 | 9.0e-109 | 61 | 359 | 301 | + probable pectinesterase | ||
| PLN02682 | PLN02682 | 5.0e-122 | 8 | 361 | 369 | + pectinesterase family protein | ||
| PLN02671 | PLN02671 | 0 | 5 | 361 | 357 | + pectinesterase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEE67559.1 | 0 | 36 | 361 | 33 | 398 | hypothetical protein OsJ_25062 [Oryza sativa Japonica Group] |
| RefSeq | NP_200370.1 | 0 | 23 | 361 | 22 | 380 | QRT1 (QUARTET 1); pectinesterase [Arabidopsis thaliana] |
| RefSeq | XP_002264297.1 | 0 | 4 | 361 | 6 | 359 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002298857.1 | 0 | 44 | 361 | 1 | 318 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002522727.1 | 0 | 11 | 361 | 33 | 383 | Pectinesterase U1 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 63 | 360 | 9 | 309 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 7e-37 | 64 | 360 | 6 | 305 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1qjv_B | 0.0000000001 | 138 | 330 | 78 | 318 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 1qjv_A | 0.0000000001 | 138 | 330 | 78 | 318 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 2ntq_B | 0.0000000001 | 138 | 330 | 78 | 318 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| GH171677 | 253 | 110 | 362 | 0 |
| EE163480 | 239 | 125 | 362 | 0 |
| EL423097 | 239 | 36 | 263 | 0 |
| FK024268 | 215 | 148 | 362 | 0 |
| GO040593 | 230 | 132 | 361 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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