Basic Information | |
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Species | Carica papaya |
Cazyme ID | evm.model.supercontig_12.214 |
Family | GH28 |
Protein Properties | Length: 399 Molecular Weight: 42749.8 Isoelectric Point: 8.7308 |
Chromosome | Chromosome/Scaffold: 12 Start: 1906619 End: 1908145 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 52 | 382 | 0 |
AFSQACQSQGQNVILVPQGTYLVGPLLVGGPCKGPLVFEVNGILRAPTDKSSINFGYWISFRYIVGLEIKGGGTFDAQGPSAWPYNNCRQDSNCKPLPTT LQLDFVKKVSVHHVKFINSKGVHVNIFKSQGVKIYQITIKAPGDSPNTDGIHMGNSKNIRIINSKIGTGDDCISLSGGSGNINVTGVQCGPGHGISIGSL GKLRNEENVAGILVQNCVFEGTTNGVRIKTWAPSNPLLVSNLVFRDIIFNNVFNPVIIDQQYCPSGHCQDWGTSQVKIQGVTYDNLSGVSSSKVAVNLQC SPSKPCENIVMKDINIQYKGAGGPTSQCSKA |
Full Sequence |
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Protein Sequence Length: 399 Download |
MASISFLPSV LFLVFSFICM HEIQVQAKIF DVRQYGAVPD GRTDNSKAFS TAFSQACQSQ 60 GQNVILVPQG TYLVGPLLVG GPCKGPLVFE VNGILRAPTD KSSINFGYWI SFRYIVGLEI 120 KGGGTFDAQG PSAWPYNNCR QDSNCKPLPT TLQLDFVKKV SVHHVKFINS KGVHVNIFKS 180 QGVKIYQITI KAPGDSPNTD GIHMGNSKNI RIINSKIGTG DDCISLSGGS GNINVTGVQC 240 GPGHGISIGS LGKLRNEENV AGILVQNCVF EGTTNGVRIK TWAPSNPLLV SNLVFRDIIF 300 NNVFNPVIID QQYCPSGHCQ DWGTSQVKIQ GVTYDNLSGV SSSKVAVNLQ CSPSKPCENI 360 VMKDINIQYK GAGGPTSQCS KAYGFASGKQ YPASCLSH* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 1.0e-67 | 32 | 392 | 367 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 3.0e-71 | 28 | 397 | 376 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 1.0e-73 | 29 | 397 | 371 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 5.0e-79 | 57 | 380 | 324 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 5.0e-108 | 29 | 395 | 370 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAQ63000.1 | 0 | 30 | 397 | 62 | 433 | oil palm polygalacturonase allergen PEST643 [Elaeis guineensis] |
RefSeq | NP_179148.1 | 0 | 1 | 392 | 1 | 399 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
Swiss-Prot | Q6H9K0 | 0 | 23 | 393 | 3 | 373 | PGLR2_PLAAC RecName: Full=Exopolygalacturonase; AltName: Full=Pollen allergen Pla a 2; AltName: Allergen=Pla a 2; Flags: Precursor |
RefSeq | XP_002273801.1 | 0 | 10 | 396 | 10 | 396 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002314146.1 | 0 | 10 | 396 | 6 | 392 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-21 | 120 | 367 | 113 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 7e-16 | 56 | 380 | 17 | 329 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 7e-16 | 56 | 380 | 17 | 329 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 7e-16 | 56 | 380 | 17 | 329 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 7e-16 | 56 | 380 | 17 | 329 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CX102400 | 252 | 31 | 282 | 0 |
DY968263 | 253 | 28 | 280 | 0 |
EE255351 | 294 | 23 | 315 | 0 |
EE255197 | 292 | 23 | 313 | 0 |
DR930531 | 287 | 48 | 329 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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