Basic Information | |
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Species | Carica papaya |
Cazyme ID | evm.model.supercontig_125.10 |
Family | GH28 |
Protein Properties | Length: 265 Molecular Weight: 28350.8 Isoelectric Point: 5.5792 |
Chromosome | Chromosome/Scaffold: 125 Start: 249475 End: 251697 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 15 | 251 | 0 |
DAPTAVTFSECKNLIVSNIWFQDSQKMHVTFQNCFNVKALDLVVTAPGNSPNTDGIHVTGTQNVFIQNCLIKTGDDCISIVSGSKNVRATGITCGPGHGI SIGSLGADNSEAYVSNIVVSNSKLSGTANGVRIKTWQGGSGSANNIMFQNIEMKNVTNPIIIDQYYCDQDNPCPEKHSAVQVSNVIYKNIKGTSATNVAI DFDCSKTVPCQDITLQDVSIASNQQYITKASCSNVDL |
Full Sequence |
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Protein Sequence Length: 265 Download |
MAMEENGGRD LPCQDAPTAV TFSECKNLIV SNIWFQDSQK MHVTFQNCFN VKALDLVVTA 60 PGNSPNTDGI HVTGTQNVFI QNCLIKTGDD CISIVSGSKN VRATGITCGP GHGISIGSLG 120 ADNSEAYVSN IVVSNSKLSG TANGVRIKTW QGGSGSANNI MFQNIEMKNV TNPIIIDQYY 180 CDQDNPCPEK HSAVQVSNVI YKNIKGTSAT NVAIDFDCSK TVPCQDITLQ DVSIASNQQY 240 ITKASCSNVD LNTRGDVHPY CNKQ* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 4.0e-71 | 17 | 249 | 238 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 9.0e-72 | 13 | 259 | 250 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 2.0e-93 | 5 | 249 | 245 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 9.0e-95 | 12 | 262 | 251 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 1.0e-98 | 12 | 259 | 248 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF21207.1 | 0 | 11 | 261 | 186 | 437 | AC013483_31 putative polygalacturonase [Arabidopsis thaliana] |
GenBank | ACV85696.1 | 0 | 19 | 261 | 198 | 441 | ripening-induced polygalacturonase 3 [Carica papaya] |
RefSeq | NP_187454.2 | 0 | 11 | 261 | 187 | 438 | QRT2 (QUARTET 2); polygalacturonase [Arabidopsis thaliana] |
RefSeq | XP_002313308.1 | 0 | 12 | 261 | 126 | 375 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002517823.1 | 0 | 9 | 261 | 194 | 446 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-22 | 14 | 240 | 148 | 367 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 8e-20 | 66 | 249 | 152 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 8e-20 | 66 | 249 | 152 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 8e-20 | 66 | 249 | 152 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 8e-20 | 66 | 249 | 152 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EH756941 | 255 | 9 | 263 | 0 |
EH767961 | 257 | 7 | 263 | 0 |
EE091344 | 225 | 10 | 234 | 0 |
CO902992 | 247 | 16 | 261 | 0 |
DV152812 | 230 | 32 | 261 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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