Basic Information | |
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Species | Carica papaya |
Cazyme ID | evm.model.supercontig_125.9 |
Family | GH28 |
Protein Properties | Length: 445 Molecular Weight: 49382.6 Isoelectric Point: 9.272 |
Chromosome | Chromosome/Scaffold: 125 Start: 241951 End: 245397 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 99 | 429 | 0 |
RAACLASNGAVLVVPRNKIYHLKPLIFSGPCKSTLTFKIYGTIKAWVKQSEYRERRHWLRFDNVHNLRVTGGGIINGNGRKWWLNSCKINKKLPCKDAPT AVTFYECSNLIVSNIWFQNSQKMHISFQSCLYVKALNLVVTAPENSPNTDGIHVTGTRNILIKNCLIRTGDDCISIVSGSKNVRATGITCGPGHGISIGS LGADNSEAYVSNVEVTNSKLTGTTNGVRIKTWQGGSGFAKNIIFHNIEMKNVTNPIIIDQNYCDQDDPCPQQASAVKVSNVLYRNIKGTSASKVAINFDC SETVPCQGILLQDVAIASKHEEPTKASCANV |
Full Sequence |
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Protein Sequence Length: 445 Download |
MPMGKEHLFC RHYLLLFSFL IIMCLLQSGF GSYQDEQSPV NDYHHPQYQP HDHKGLVMVM 60 RRFSRAHPPQ PSPRIVNVDR YGAKANGRDD SQAFKKAWRA ACLASNGAVL VVPRNKIYHL 120 KPLIFSGPCK STLTFKIYGT IKAWVKQSEY RERRHWLRFD NVHNLRVTGG GIINGNGRKW 180 WLNSCKINKK LPCKDAPTAV TFYECSNLIV SNIWFQNSQK MHISFQSCLY VKALNLVVTA 240 PENSPNTDGI HVTGTRNILI KNCLIRTGDD CISIVSGSKN VRATGITCGP GHGISIGSLG 300 ADNSEAYVSN VEVTNSKLTG TTNGVRIKTW QGGSGFAKNI IFHNIEMKNV TNPIIIDQNY 360 CDQDDPCPQQ ASAVKVSNVL YRNIKGTSAS KVAINFDCSE TVPCQGILLQ DVAIASKHEE 420 PTKASCANVI LDTRGDVFPY CFNN* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 2.0e-100 | 76 | 429 | 361 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 3.0e-109 | 66 | 439 | 381 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 2.0e-123 | 108 | 429 | 322 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 6.0e-144 | 56 | 443 | 396 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 1.0e-152 | 57 | 441 | 389 | + polygalacturonase ADPG |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAC26512.1 | 0 | 10 | 441 | 11 | 458 | polygalacturonase precursor [Cucumis melo] |
GenBank | ACV85696.1 | 0 | 1 | 444 | 1 | 444 | ripening-induced polygalacturonase 3 [Carica papaya] |
RefSeq | NP_187454.2 | 0 | 14 | 441 | 6 | 438 | QRT2 (QUARTET 2); polygalacturonase [Arabidopsis thaliana] |
RefSeq | XP_002313308.1 | 0 | 69 | 441 | 2 | 375 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002517823.1 | 0 | 65 | 441 | 69 | 446 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 2e-20 | 150 | 426 | 55 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 2e-20 | 150 | 426 | 55 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 2e-20 | 150 | 426 | 55 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 2e-20 | 150 | 426 | 55 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 2e-20 | 150 | 426 | 55 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |