y
Basic Information | |
---|---|
Species | Carica papaya |
Cazyme ID | evm.model.supercontig_129.30 |
Family | GT5 |
Protein Properties | Length: 417 Molecular Weight: 47117.2 Isoelectric Point: 8.4256 |
Chromosome | Chromosome/Scaffold: 129 Start: 257257 End: 260594 |
Description | starch synthase 4 |
View CDS |
External Links |
---|
NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GT5 | 22 | 221 | 3.2e-26 |
YDLSWWSSKNFGFSSGGIIYSNKVVMLTSMHSKGMIIRSFAHGLESTLAIHKQKLVIAPFGFDNSTWDPSKDKFLPENYSAEDMKGKSVCKVALQKWLGL AQNASTIIVGFIFSEVSDVDLENLKAIVRDTTGRSVQFIFMGISKMPDVTKPLDSVQEDFKVLGHMNFTYYSCIKEILINLEPQSLSGSDILLCRSFHDP |
Full Sequence |
---|
Protein Sequence Length: 417 Download |
MSSNSKKSDE VRWAYPCLVQ LYDLSWWSSK NFGFSSGGII YSNKVVMLTS MHSKGMIIRS 60 FAHGLESTLA IHKQKLVIAP FGFDNSTWDP SKDKFLPENY SAEDMKGKSV CKVALQKWLG 120 LAQNASTIIV GFIFSEVSDV DLENLKAIVR DTTGRSVQFI FMGISKMPDV TKPLDSVQED 180 FKVLGHMNFT YYSCIKEILI NLEPQSLSGS DILLCRSFHD PIFQAPNYLM AYKSLSRYST 240 NHILTVYSQL VKRYVIPLSE NSVYWKMQLK ALKCGAAPVN YLMAYNSSPP PSPHQLRQSY 300 FNGILPVGRY IIPLSENSVY WKMQLKALKY GAVPVVVAQS DEIFRHFVDH DQETTRFPQF 360 MCSAFGNLSL SQAIDQIENN PSTWTRKVTD AMAKDFSWDA ECSDIHVSAY TFIKGL* 420 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd03791 | GT1_Glycogen_synthase_DULL1_like | 0.001 | 323 | 400 | 87 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
TIGR02095 | glgA | 4.0e-6 | 323 | 399 | 81 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
PRK00654 | glgA | 2.0e-16 | 37 | 163 | 142 | + glycogen synthase; Provisional | ||
cd03791 | GT1_Glycogen_synthase_DULL1_like | 3.0e-17 | 32 | 163 | 141 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
TIGR02095 | glgA | 2.0e-18 | 34 | 163 | 132 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACD13789.1 | 0 | 37 | 232 | 407 | 596 | starch synthase V precursor [Vitis vinifera] |
GenBank | ACD13789.1 | 6e-24 | 325 | 416 | 591 | 682 | starch synthase V precursor [Vitis vinifera] |
EMBL | CBI18615.1 | 0 | 29 | 232 | 489 | 683 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002262708.1 | 0 | 37 | 232 | 55 | 244 | PREDICTED: starch synthase V, partial [Vitis vinifera] |
RefSeq | XP_002262708.1 | 4e-25 | 325 | 416 | 239 | 330 | PREDICTED: starch synthase V, partial [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3vuf_A | 0.000006 | 28 | 221 | 228 | 413 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
PDB | 3vue_A | 0.000006 | 28 | 221 | 228 | 413 | A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain |
PDB | 1rzv_B | 0.002 | 34 | 128 | 199 | 293 | A Chain A, Crystal Structure Of The Glycogen Synthase From Agrobacterium Tumefaciens (Non-Complexed Form) |
PDB | 1rzv_A | 0.002 | 34 | 128 | 199 | 293 | A Chain A, Crystal Structure Of The Glycogen Synthase From Agrobacterium Tumefaciens (Non-Complexed Form) |
PDB | 1rzu_B | 0.002 | 34 | 128 | 199 | 293 | A Chain A, Crystal Structure Of The Glycogen Synthase From A. Tumefaciens In Complex With Adp |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
EX246410 | 146 | 37 | 182 | 0 |
DV455772 | 196 | 37 | 232 | 0 |
FN724502 | 196 | 37 | 232 | 0 |
CO901418 | 194 | 39 | 232 | 0 |
DV455772 | 29 | 322 | 350 | 1.6 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|