Basic Information | |
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Species | Carica papaya |
Cazyme ID | evm.model.supercontig_129.7 |
Family | PL4 |
Protein Properties | Length: 480 Molecular Weight: 55416.3 Isoelectric Point: 5.6083 |
Chromosome | Chromosome/Scaffold: 129 Start: 39280 End: 44921 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 140 | 402 | 0 |
LKNMFTSTHYTGKEVDTEYRNGETWKKVFGPVFVYLNSQSRQSPEQSNKNLWEDAKRQMVREVQSWPYDFVESEDFPRAEERGTVAGQLQVLDRYINAKI ILPRFASVGLAAPGETGSWQTEAKGYQFWTQTDNRGYFTINNIRPGTYNLYAWVPGFIGDYKYNVDIQIDPGRTIKLGSLVYQPPRNGPTMWEIGIPDRT AGEFYIPDPYPTLMNGLPATNYNNKFRQYGLWNRYTDLYPNEDLTYTIGECDYSEDWFFAQVR |
Full Sequence |
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Protein Sequence Length: 480 Download |
MANLVWSEAV PVWSEKTPVR KFLALDPGIQ LNSKEHDKII IDNGILQITF SKPDGLIIGI 60 KYNGIENVLD DANTIDDRGY WDIVWYEPNT PLKIDKIEGT QFRVVTQNED QIEISFSRTW 120 NQSNLGSQVP LNVDKRLSYL KNMFTSTHYT GKEVDTEYRN GETWKKVFGP VFVYLNSQSR 180 QSPEQSNKNL WEDAKRQMVR EVQSWPYDFV ESEDFPRAEE RGTVAGQLQV LDRYINAKII 240 LPRFASVGLA APGETGSWQT EAKGYQFWTQ TDNRGYFTIN NIRPGTYNLY AWVPGFIGDY 300 KYNVDIQIDP GRTIKLGSLV YQPPRNGPTM WEIGIPDRTA GEFYIPDPYP TLMNGLPATN 360 YNNKFRQYGL WNRYTDLYPN EDLTYTIGEC DYSEDWFFAQ VRINKPVREA PEFSTGLIGR 420 DNAIARHGIH GLYKLYRIDV KSNLLVRGKN IIYLRQSRSA GQFQGLMYDY IRLEEPPRT* 480 |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
cd10320 | RGL4_N | 6.0e-7 | 142 | 182 | 41 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. |
cd10320 | RGL4_N | 6.0e-12 | 39 | 121 | 89 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. |
cd10317 | RGL4_C | 7.0e-31 | 331 | 474 | 179 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. |
cd10316 | RGL4_M | 4.0e-31 | 220 | 319 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. |
pfam06045 | Rhamnogal_lyase | 2.0e-40 | 24 | 142 | 119 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_179847.1 | 0 | 142 | 479 | 299 | 677 | lyase [Arabidopsis thaliana] |
RefSeq | XP_002308510.1 | 2e-31 | 16 | 136 | 30 | 154 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002308510.1 | 0 | 142 | 476 | 296 | 671 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527245.1 | 3e-26 | 39 | 136 | 2 | 99 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527245.1 | 0 | 142 | 479 | 241 | 621 | lyase, putative [Ricinus communis] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DW508463 | 268 | 137 | 404 | 0 |
EV572092 | 263 | 142 | 401 | 0 |
CO099050 | 255 | 139 | 393 | 0 |
EV569668 | 260 | 145 | 401 | 0 |
DY969340 | 263 | 142 | 404 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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