y
Basic Information | |
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Species | Carica papaya |
Cazyme ID | evm.model.supercontig_136.8 |
Family | GH28 |
Protein Properties | Length: 223 Molecular Weight: 23827.2 Isoelectric Point: 8.1522 |
Chromosome | Chromosome/Scaffold: 136 Start: 102448 End: 103348 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 2 | 200 | 0 |
KLIAPDESPNTDGIHTGRSDGIVIEDVIIETGDDCISIGDGTKNLKVSKVSCGPGHGISIGSLGRVQEQPVDNIRVWNCTIKGTNNGIRIKSWPSAPGRT TVSNVHFDDIIMDNVSFPILIDQEYCSHNLCNRKNPSNVKITNTIFKNIRGTSATQVVTKLACSSGAPCEGVELGNIHLTYKGRFNGPSMFKCDNVKPK |
Full Sequence |
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Protein Sequence Length: 223 Download |
MKLIAPDESP NTDGIHTGRS DGIVIEDVII ETGDDCISIG DGTKNLKVSK VSCGPGHGIS 60 IGSLGRVQEQ PVDNIRVWNC TIKGTNNGIR IKSWPSAPGR TTVSNVHFDD IIMDNVSFPI 120 LIDQEYCSHN LCNRKNPSNV KITNTIFKNI RGTSATQVVT KLACSSGAPC EGVELGNIHL 180 TYKGRFNGPS MFKCDNVKPK ITGKQIPVAC STPMATKTLD SS* 240 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 2.0e-45 | 5 | 180 | 177 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-50 | 1 | 186 | 189 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 8.0e-54 | 1 | 210 | 212 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 3.0e-67 | 2 | 198 | 198 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 1.0e-75 | 1 | 210 | 211 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABE65925.1 | 0 | 1 | 218 | 57 | 274 | polygalacturonase/pectinase [Arabidopsis thaliana] |
GenBank | ABN13878.1 | 0 | 1 | 214 | 177 | 390 | polygalacturonase [Brassica rapa subsp. campestris] |
EMBL | CAA05892.1 | 0 | 1 | 215 | 177 | 391 | polygalacturonase [Arabidopsis thaliana] |
RefSeq | NP_187439.1 | 0 | 1 | 215 | 177 | 391 | polygalacturonase 3 (PGA3) / pectinase [Arabidopsis thaliana] |
RefSeq | NP_199625.1 | 0 | 1 | 214 | 177 | 390 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1hg8_A | 9e-17 | 11 | 185 | 165 | 336 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 2iq7_G | 1e-16 | 11 | 197 | 153 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 1e-16 | 11 | 197 | 153 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 1e-16 | 11 | 197 | 153 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 1e-16 | 11 | 197 | 153 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CX192499 | 218 | 1 | 217 | 0 |
GR450666 | 215 | 1 | 214 | 0 |
GR438038 | 215 | 1 | 214 | 0 |
GR456888 | 215 | 1 | 214 | 0 |
GR460755 | 215 | 1 | 214 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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