Basic Information | |
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Species | Carica papaya |
Cazyme ID | evm.model.supercontig_14.219 |
Family | GH28 |
Protein Properties | Length: 391 Molecular Weight: 42257.4 Isoelectric Point: 8.4194 |
Chromosome | Chromosome/Scaffold: 14 Start: 2397143 End: 2398662 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 62 | 387 | 0 |
WHEACSSINPATIYVPVGKFLLHNAVFQGKCKNNISIRIEGTLVAPPYKVTKFFENWVLFEGVNGVSIFGGILDGQGASLWACKKSHKGCPKGATTLRFK RSSNIELNGVTSVNSQLYHIVIEESYNVKVQGAKVSASGDSPNTDGIHVQLSKDITIFDSRIATGDDCISVGPGTTNLWIENIACGPGHGISIGSLGKEL KEAGVEDVTVKSVRLSGTKNGLRIKTWGRPSSGYARNIHFQNVVMNKVKNPIIIDQQYCPDKHCPHKVSGIKISEITYENIHGTSATKVGIMLDCSSEQP CSGIRMEDVNLTYEDKPAQASCINAN |
Full Sequence |
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Protein Sequence Length: 391 Download |
MANLMVNSVS HIIVVIIIFI FFFFCIKTSS ASPTSTRTFN VVHYGAKPDG LTDSTKAFIA 60 AWHEACSSIN PATIYVPVGK FLLHNAVFQG KCKNNISIRI EGTLVAPPYK VTKFFENWVL 120 FEGVNGVSIF GGILDGQGAS LWACKKSHKG CPKGATTLRF KRSSNIELNG VTSVNSQLYH 180 IVIEESYNVK VQGAKVSASG DSPNTDGIHV QLSKDITIFD SRIATGDDCI SVGPGTTNLW 240 IENIACGPGH GISIGSLGKE LKEAGVEDVT VKSVRLSGTK NGLRIKTWGR PSSGYARNIH 300 FQNVVMNKVK NPIIIDQQYC PDKHCPHKVS GIKISEITYE NIHGTSATKV GIMLDCSSEQ 360 PCSGIRMEDV NLTYEDKPAQ ASCINANIDQ * |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
pfam00295 | Glyco_hydro_28 | 6.0e-93 | 66 | 386 | 324 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
PLN02793 | PLN02793 | 4.0e-95 | 28 | 372 | 357 | + Probable polygalacturonase |
PLN02218 | PLN02218 | 2.0e-96 | 26 | 388 | 371 | + polygalacturonase ADPG |
PLN02188 | PLN02188 | 2.0e-107 | 35 | 386 | 361 | + polygalacturonase/glycoside hydrolase family protein |
PLN02155 | PLN02155 | 1.0e-125 | 32 | 386 | 358 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACV85697.1 | 0 | 25 | 390 | 25 | 389 | ripening-induced polygalacturonase 4 [Carica papaya] |
DDBJ | BAC22689.1 | 0 | 18 | 386 | 14 | 384 | polygalacturonase [Pyrus communis] |
DDBJ | BAF42034.1 | 0 | 5 | 386 | 1 | 384 | polygalacturonase3 [Pyrus communis] |
EMBL | CAH18935.1 | 0 | 5 | 386 | 1 | 384 | polygalacturonase [Pyrus communis] |
RefSeq | XP_002529090.1 | 0 | 1 | 387 | 1 | 380 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 7e-24 | 129 | 375 | 113 | 364 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 1e-18 | 28 | 380 | 10 | 346 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1hg8_A | 6e-16 | 59 | 368 | 11 | 327 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 2iq7_G | 0.000000000000003 | 65 | 384 | 17 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 0.000000000000003 | 65 | 384 | 17 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |