Basic Information | |
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Species | Carica papaya |
Cazyme ID | evm.model.supercontig_146.54 |
Family | GH28 |
Protein Properties | Length: 495 Molecular Weight: 53077.7 Isoelectric Point: 4.6196 |
Chromosome | Chromosome/Scaffold: 146 Start: 282735 End: 285122 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 123 | 452 | 0 |
WKAACASDSGVLLAPADHVFMVTSTIFSGPCKPGLVFQVEGVLMPPDGPECWPEADSHKQWLVFYRLDQMTLTGKGTIEGNGQKWWDLPCKPHRGPDGST SSGPCDSPALIRFFMSNNLVLSGLRIQNSPQFHVKFDGCEGVLIENLQISSPKLSPNTDGIHVENTKSVGIYNSMISNGDDCISIGPGCSNVDIDGVTCG PSHGISIGSLGVHNSQACVSNITVRNAIIKESDTGLRLKTWQGGSGCVSGLLFENIQMENVRNCIIIDQYYCLSKGCRNQTSAVYVTDVQYRNIKGTYDV RSPPIHFACSDTVACTNITMAEVELLPEEG |
Full Sequence |
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Protein Sequence Length: 495 Download |
MEIGRGGLAI LVFTALLIHY SSNVEGRYHF HKKQKTKEPS KGSHPVDSPD SQDPPSVPSD 60 PYPMPAPPEE LPSPSAPSPS IPSDPYPNDP SANSTSNCIF DVTTFGAVGD GSADDTAAFT 120 AAWKAACASD SGVLLAPADH VFMVTSTIFS GPCKPGLVFQ VEGVLMPPDG PECWPEADSH 180 KQWLVFYRLD QMTLTGKGTI EGNGQKWWDL PCKPHRGPDG STSSGPCDSP ALIRFFMSNN 240 LVLSGLRIQN SPQFHVKFDG CEGVLIENLQ ISSPKLSPNT DGIHVENTKS VGIYNSMISN 300 GDDCISIGPG CSNVDIDGVT CGPSHGISIG SLGVHNSQAC VSNITVRNAI IKESDTGLRL 360 KTWQGGSGCV SGLLFENIQM ENVRNCIIID QYYCLSKGCR NQTSAVYVTD VQYRNIKGTY 420 DVRSPPIHFA CSDTVACTNI TMAEVELLPE EGQLVDDPFC WNAYGTQETF TIPPINCLQE 480 GMPQKVSEVA AYTC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 4.0e-64 | 96 | 474 | 385 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03003 | PLN03003 | 5.0e-66 | 95 | 479 | 393 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 2.0e-80 | 102 | 447 | 350 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 5.0e-87 | 133 | 447 | 317 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 8.0e-99 | 99 | 486 | 393 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAK95305.1 | 0 | 11 | 483 | 12 | 463 | AF410319_1 At1g48100/F21D18_17 [Arabidopsis thaliana] |
RefSeq | NP_175244.1 | 0 | 11 | 483 | 12 | 463 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002263668.1 | 0 | 1 | 494 | 1 | 477 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002312305.1 | 0 | 1 | 494 | 1 | 482 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002519290.1 | 0 | 1 | 494 | 1 | 479 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-21 | 196 | 398 | 115 | 319 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 6e-21 | 180 | 447 | 55 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 6e-21 | 180 | 447 | 55 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 6e-21 | 180 | 447 | 55 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 6e-21 | 180 | 447 | 55 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DW479564 | 327 | 107 | 433 | 0 |
CX663441 | 286 | 210 | 495 | 0 |
DY277859 | 366 | 94 | 455 | 0 |
ES849368 | 295 | 146 | 438 | 0 |
GR169315 | 263 | 180 | 442 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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