Basic Information | |
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Species | Carica papaya |
Cazyme ID | evm.model.supercontig_151.22 |
Family | GH28 |
Protein Properties | Length: 426 Molecular Weight: 45374.5 Isoelectric Point: 7.1917 |
Chromosome | Chromosome/Scaffold: 151 Start: 204907 End: 206573 |
Description | polygalacturonase 4 |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 79 | 412 | 0 |
AACNNPTPAKVVIPEGEFLTGPVVFQGPCKAKPITVEVLGTVRATTDISEYTSGEWFMFEYIDGLILTGTGTFHGSGETAWQYNNCANNNRCQMLPTSLK FSHLNNTEVSGITSINSKGFHIFLLYSQNFTAININATAPDESPNTDGFHTSNCNLVTIRDSFFGTGDDCVSIGHGTTNAHVSGITCGPGHGLSVGSLGK YDDEKDVTDITFKNCTLTNTTNGARIKTWANSPPSQALNIRYENIVLNAVKNPIIIDQNYGAKKKAPAPKPSQVKVKDIHFINIRGTSVSNVAVSLSCSA SFPCEVVEMADINISYGGKNIRNTTILSSCLNAK |
Full Sequence |
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Protein Sequence Length: 426 Download |
MAIAKRLLGG IIIDNVKFVG LIILALHYCS CVANGAEFPG VRRALAGGAG PAVFDITKHG 60 AQPDPSFDNV EAIMDAWLAA CNNPTPAKVV IPEGEFLTGP VVFQGPCKAK PITVEVLGTV 120 RATTDISEYT SGEWFMFEYI DGLILTGTGT FHGSGETAWQ YNNCANNNRC QMLPTSLKFS 180 HLNNTEVSGI TSINSKGFHI FLLYSQNFTA ININATAPDE SPNTDGFHTS NCNLVTIRDS 240 FFGTGDDCVS IGHGTTNAHV SGITCGPGHG LSVGSLGKYD DEKDVTDITF KNCTLTNTTN 300 GARIKTWANS PPSQALNIRY ENIVLNAVKN PIIIDQNYGA KKKAPAPKPS QVKVKDIHFI 360 NIRGTSVSNV AVSLSCSASF PCEVVEMADI NISYGGKNIR NTTILSSCLN AKLSYKGKQN 420 PPACL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 4.0e-72 | 51 | 421 | 377 | + polygalacturonase ADPG | ||
PLN02155 | PLN02155 | 2.0e-74 | 53 | 425 | 374 | + polygalacturonase | ||
PLN02793 | PLN02793 | 7.0e-83 | 53 | 425 | 380 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 2.0e-95 | 81 | 414 | 334 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 5.0e-129 | 47 | 424 | 381 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI36886.1 | 0 | 16 | 424 | 5 | 414 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_171778.1 | 0 | 1 | 424 | 1 | 420 | PGA4 (POLYGALACTURONASE 4); polygalacturonase [Arabidopsis thaliana] |
RefSeq | XP_002268540.1 | 0 | 16 | 424 | 5 | 410 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002272193.1 | 0 | 20 | 424 | 6 | 426 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002301489.1 | 0 | 21 | 424 | 7 | 412 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ib4_B | 8e-18 | 150 | 397 | 83 | 325 | A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes Takasagoensis, At Ph 2.5. |
PDB | 1ib4_A | 8e-18 | 150 | 397 | 83 | 325 | A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes Takasagoensis, At Ph 2.5. |
PDB | 1ia5_A | 8e-18 | 150 | 397 | 83 | 325 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
PDB | 1bhe_A | 2e-16 | 171 | 357 | 148 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 0.00000000000002 | 141 | 365 | 76 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GR450604 | 272 | 68 | 339 | 0 |
GR460098 | 272 | 68 | 339 | 0 |
GR456128 | 272 | 68 | 339 | 0 |
GR461567 | 272 | 68 | 339 | 0 |
GR462868 | 269 | 71 | 339 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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