| Basic Information | |
|---|---|
| Species | Carica papaya |
| Cazyme ID | evm.model.supercontig_152.17 |
| Family | CBM53 |
| Protein Properties | Length: 1196 Molecular Weight: 135234 Isoelectric Point: 6.1746 |
| Chromosome | Chromosome/Scaffold: 152 Start: 97816 End: 111788 |
| Description | starch synthase 3 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CBM53 | 311 | 394 | 2.4e-30 |
| QDVEVFLNRSLSTLKNEPDLLIMGAFNDWRWKQFTRRLNKTHLAGDWWSCLLHVPMEAYKMDFVFFNGQSIFDNNEEKDFCIPV | |||
| CBM53 | 647 | 735 | 1.4e-32 |
| GSTVTVFYNPANTVLNGKPEVWFRCSFNRWTHRMGTLPPQKMLLADNGPHVKSTVRVPLDAYMMDFVFSEREDDGVFDNKNGTDYHIPV | |||
| CBM53 | 486 | 575 | 6.4e-33 |
| DRVKLYYRKSSGPLANAKELWVHGGYNNWKDGLSFAERLVNSETKGADWWYAEVIVPDRAILLDWVFADGPPQEATLYDNNHQQDFHAVV | |||
| GT5 | 746 | 1189 | 0 |
| HIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVNIILPKYDCLNLSNVKDFHYDRGFHWSGTEIKVWFGKVEGLSVYFLEPQNGLFSRGCVYGCGDD GQRFGFFCHAALEFLQQGGFHPDIIHCHDWSSAPVAWLFKDYYMHYGLSKTRIVFTIHNLEFGAPLIGKAMAYSDKATTVSHTYSKEVAGNPAIAPHLHK FHGIVNGIDPDIWDPCNDKFIPVSYTSENVVEGKRAAKQALQQRLGLEISDLPLVGIITRLTHQKGIHLIKHAIWRTLERSGQVVLLGSAPDPRIQNDFV NLANQLHSSHGGHARLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLIAMRYGSIPVVRKTGGLYDTVFDVDHDKDRAEAQGLEPNGFNFDGADSAGV DYALNRAISAWYDSRDWFNSLCKKVMEQDWSWNRPALDYMELYH | |||
| Full Sequence |
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| Protein Sequence Length: 1196 Download |
| MEVGLHVQSP VSCRGLFQER GSLKIKPFSG FFLHHRRTSR FCQFTPLGIN YSAGGISHGI 60 TASSDFSRRK PRRTSVPRSR GPGPKGFVPK TPMETSSQKK DSRNNAGKDG TGTATSTELR 120 GPGKKQPEVR IDTDQKLEVE HSHIKIVEEA QKEEEEIPSK NKQLNVLGSG QSTENGSLGR 180 IDDDVALLEE NVIISRSDIE NAVGELCSEG AERDADEVAG GLGSEGSESD AEDVADEVAL 240 EEKHSDIGKR NDIFKNESIE KDETGTKDDS EKLKLKMEAT KRKQEIEALA YDNFSKGNKM 300 FVYPQVVKPD QDVEVFLNRS LSTLKNEPDL LIMGAFNDWR WKQFTRRLNK THLAGDWWSC 360 LLHVPMEAYK MDFVFFNGQS IFDNNEEKDF CIPVEGGMDI IAFEDFLLEE KRRELEKLAE 420 EQAEKERQEE EQRRREAEKA ASEADRTQAK TETGRRREIF QQVMKKAARS VENIWYIEPS 480 EFKGEDRVKL YYRKSSGPLA NAKELWVHGG YNNWKDGLSF AERLVNSETK GADWWYAEVI 540 VPDRAILLDW VFADGPPQEA TLYDNNHQQD FHAVVPKCIP EELYWAKEEH LIFTKLQEER 600 MLREEAMRAK AEKTARMKAE TKERTLKNFL LSQKHIVYTE PLDVQAGSTV TVFYNPANTV 660 LNGKPEVWFR CSFNRWTHRM GTLPPQKMLL ADNGPHVKST VRVPLDAYMM DFVFSEREDD 720 GVFDNKNGTD YHIPVLGGVA KEPPMHIVHI AVEMAPIAKV GGLGDVVTSL SRAVQDLNHN 780 VNIILPKYDC LNLSNVKDFH YDRGFHWSGT EIKVWFGKVE GLSVYFLEPQ NGLFSRGCVY 840 GCGDDGQRFG FFCHAALEFL QQGGFHPDII HCHDWSSAPV AWLFKDYYMH YGLSKTRIVF 900 TIHNLEFGAP LIGKAMAYSD KATTVSHTYS KEVAGNPAIA PHLHKFHGIV NGIDPDIWDP 960 CNDKFIPVSY TSENVVEGKR AAKQALQQRL GLEISDLPLV GIITRLTHQK GIHLIKHAIW 1020 RTLERSGQVV LLGSAPDPRI QNDFVNLANQ LHSSHGGHAR LCLTYDEPLS HLIYAGADFI 1080 LVPSIFEPCG LTQLIAMRYG SIPVVRKTGG LYDTVFDVDH DKDRAEAQGL EPNGFNFDGA 1140 DSAGVDYALN RAISAWYDSR DWFNSLCKKV MEQDWSWNRP ALDYMELYHA ARKGK* 1200 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02316 | PLN02316 | 8.0e-10 | 74 | 184 | 115 | + synthase/transferase | ||
| TIGR02095 | glgA | 1.0e-157 | 745 | 1191 | 491 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| PRK00654 | glgA | 2.0e-172 | 745 | 1193 | 488 | + glycogen synthase; Provisional | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 2.0e-178 | 746 | 1189 | 489 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| PLN02316 | PLN02316 | 0 | 243 | 1193 | 952 | + synthase/transferase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009058 | biosynthetic process |
| GO:2001070 | starch binding |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACT09059.1 | 0 | 1 | 1193 | 1 | 1228 | starch synthase III precursor [Solanum lycopersicum] |
| EMBL | CAA64173.1 | 0 | 1 | 1193 | 1 | 1228 | soluble-starch-synthase [Solanum tuberosum] |
| RefSeq | XP_002269011.1 | 0 | 1 | 1193 | 1 | 1140 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002305571.1 | 0 | 236 | 1193 | 45 | 1017 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002518476.1 | 0 | 75 | 1193 | 2 | 1058 | starch synthase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3d1j_A | 0 | 745 | 1189 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 3guh_A | 0 | 745 | 1189 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4u_A | 0 | 745 | 1189 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4t_A | 0 | 745 | 1189 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2qzs_A | 0 | 745 | 1189 | 1 | 474 | A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With Adp And Glucose(Wtgsb) |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
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| Hit | Length | Start | End | EValue |
| HO778003 | 723 | 258 | 980 | 0 |
| HO794758 | 567 | 627 | 1193 | 0 |
| HO651392 | 413 | 783 | 1195 | 0 |
| HO794758 | 117 | 291 | 398 | 0.0002 |
| HO794758 | 130 | 455 | 582 | 7.6 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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