Basic Information | |
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Species | Carica papaya |
Cazyme ID | evm.model.supercontig_1615.1 |
Family | GH28 |
Protein Properties | Length: 406 Molecular Weight: 44332.1 Isoelectric Point: 9.3134 |
Chromosome | Chromosome/Scaffold: 1615 Start: 1900 End: 3723 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 61 | 393 | 0 |
KEACEWNGRGRVYIPVGRYLVGEILFMGPCKGSLSFFIKGDLKAPANPFSIKGDTWIAFRYIDHLVVTGGGTLDGQGPSAWPFNDCHKNPNCRPLATTMA FQFVKESKLKRIKSLNSKNTHFSFFGCENMKVSNLIISAPANSPNTDGIKIGMSNNIEFSSLNIGTGDDCIAMLSGISNINISKVQCGPGHGISIGSLGK NPGERNIERITIKDSTISHSSDGLRIKTWADSISSIVVSDIIYDNIIINNVGTPINIDQQYCPYPPCNLKPGSTVQIKDVTFRNIRGTTRSKTAVNLKCS KRFPCKNIVLHDVNLSSRGPEGPARTLCEYVNG |
Full Sequence |
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Protein Sequence Length: 406 Download |
MARIILGLNN CFIARVCLST FLFLCLTEAA DLYVKVFDVR KYGARGDGKT DNTKAFLSAW 60 KEACEWNGRG RVYIPVGRYL VGEILFMGPC KGSLSFFIKG DLKAPANPFS IKGDTWIAFR 120 YIDHLVVTGG GTLDGQGPSA WPFNDCHKNP NCRPLATTMA FQFVKESKLK RIKSLNSKNT 180 HFSFFGCENM KVSNLIISAP ANSPNTDGIK IGMSNNIEFS SLNIGTGDDC IAMLSGISNI 240 NISKVQCGPG HGISIGSLGK NPGERNIERI TIKDSTISHS SDGLRIKTWA DSISSIVVSD 300 IIYDNIIINN VGTPINIDQQ YCPYPPCNLK PGSTVQIKDV TFRNIRGTTR SKTAVNLKCS 360 KRFPCKNIVL HDVNLSSRGP EGPARTLCEY VNGRSYGKMI PPACF* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 1.0e-75 | 39 | 401 | 369 | + polygalacturonase ADPG | ||
PLN02155 | PLN02155 | 3.0e-76 | 21 | 405 | 389 | + polygalacturonase | ||
PLN02793 | PLN02793 | 4.0e-87 | 35 | 405 | 379 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 3.0e-87 | 74 | 391 | 318 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 8.0e-120 | 37 | 404 | 370 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_173158.1 | 0 | 35 | 405 | 31 | 401 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_175003.1 | 0 | 16 | 405 | 11 | 403 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_175004.1 | 0 | 16 | 398 | 11 | 396 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_177961.2 | 0 | 35 | 404 | 33 | 402 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_193112.2 | 0 | 12 | 405 | 6 | 403 | polygalacturonase [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1hg8_A | 2e-17 | 91 | 352 | 48 | 308 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 1nhc_F | 6e-17 | 130 | 391 | 77 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 6e-17 | 130 | 391 | 77 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 6e-17 | 130 | 391 | 77 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 6e-17 | 130 | 391 | 77 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |