y
Basic Information | |
---|---|
Species | Carica papaya |
Cazyme ID | evm.model.supercontig_17.208 |
Family | PL1 |
Protein Properties | Length: 437 Molecular Weight: 48920.7 Isoelectric Point: 9.6746 |
Chromosome | Chromosome/Scaffold: 17 Start: 2523744 End: 2525430 |
Description | Pectate lyase family protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
PL1 | 158 | 356 | 0 |
ITFAHDMIIKLSQELLVTSHKTIDARGANIRIAYGAGITVQFVQNVIIHNLHIHDVQGASGGMIRDSVGHFGLRTRSDGDGISVYGSSHVWIDHISMSNC FDGLIDVIMGSTAITISNSHFTRHNDVMLFGASDSYPEDKVMQVTVAFNHFGQGLIQRMPRCRWGFVHVVNNDYTHWLMYAIGGSSNPTILSQGNRFIA |
Full Sequence |
---|
Protein Sequence Length: 437 Download |
MAGNGFLFLF TIIFGVIPSL KGHIGEYDDV WQKRAEEAKK ASMDAYHPNP EEITFKLNEQ 60 VHLSLEGTNS TRRSLKGKKK RGGRCEATNP IDRCWRCNRN WARNRKKLAD CALGFGRRTI 120 GGRDGPFYEV TDPSDSDMLN PKPGTLRHAV TRDGPLWITF AHDMIIKLSQ ELLVTSHKTI 180 DARGANIRIA YGAGITVQFV QNVIIHNLHI HDVQGASGGM IRDSVGHFGL RTRSDGDGIS 240 VYGSSHVWID HISMSNCFDG LIDVIMGSTA ITISNSHFTR HNDVMLFGAS DSYPEDKVMQ 300 VTVAFNHFGQ GLIQRMPRCR WGFVHVVNND YTHWLMYAIG GSSNPTILSQ GNRFIAPPNQ 360 ACKEVTKRDY APESEWKNWS WRSEGDLMMN GAFFVQSGRP IIKKKSRNVI SAKPGTYVRR 420 LTRHSGSLDC FYGKPC* 480 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam13229 | Beta_helix | 0.004 | 193 | 291 | 105 | + Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases. | ||
pfam04431 | Pec_lyase_N | 3.0e-17 | 23 | 71 | 50 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
COG3866 | PelB | 1.0e-29 | 171 | 354 | 196 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 8.0e-67 | 170 | 354 | 207 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 3.0e-77 | 163 | 358 | 207 | + Amb_all domain. |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN79927.1 | 0 | 16 | 436 | 20 | 439 | hypothetical protein [Vitis vinifera] |
EMBL | CBI22159.1 | 0 | 16 | 436 | 49 | 468 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002311599.1 | 0 | 9 | 436 | 1 | 429 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002330086.1 | 0 | 4 | 436 | 6 | 435 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002520133.1 | 0 | 6 | 436 | 9 | 440 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 89 | 426 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 89 | 426 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 6e-23 | 146 | 345 | 38 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.000000000000009 | 172 | 354 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pe9_B | 0.0000000000001 | 243 | 367 | 151 | 303 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
HO778688 | 406 | 33 | 437 | 0 |
CO103662 | 283 | 118 | 400 | 0 |
FG606120 | 349 | 48 | 396 | 0 |
CK262438 | 293 | 106 | 398 | 0 |
GT740031 | 294 | 106 | 398 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|
![]() |