Basic Information | |
---|---|
Species | Carica papaya |
Cazyme ID | evm.model.supercontig_177.18 |
Family | PL4 |
Protein Properties | Length: 693 Molecular Weight: 79741.5 Isoelectric Point: 7.4076 |
Chromosome | Chromosome/Scaffold: 177 Start: 397245 End: 404946 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
PL4 | 50 | 664 | 0 |
FQGVRLHIHDRYVVMDNGILQVTLSRPGGIVTGIRYGGIDNLLEVRNKETNRGYWDLHWNEPGGKGIFDVIHGTSFRVIIENEEQVELSFSRMWDPSLEG KFVPLSIDKRFIMLRGSSGFYSYAIYEHLEEWPGFEIGETRIAFKLRKDKFRYMAIADNRQRYMPLPDDLSKERCQTLDYPEAALLVHPTDPQLQGEVDD KYQYSCENKDLRVHGWICFDPPIGFWQITPSDEFRSGGPLKQNLSSHVGPTTLAMFLSAHYAGKYMMPHFKHGEPWKKVFGPVFIYLNSAANRNDPFLLW EDAKMQMTIEVESWPYNFPASEDYQKSEQRGNLSGRFLVYDRYICSEYILGQGAYVGLAPPGDVGSWQMESKNYQFWSRADENGFFCIKNIRTGDYNLYA WIPGFIGDYCNNVIITITSGCNIEIGDIVYEPPRDGPTLWEIGFPDRTAAKFYIPDPDPMHVNKLFINHPDRFRQYGLWKRYAQLYPHEDLVYTVGVSDY RKDWFFAQVVRKKEDGTYQGTTWQIKFKLDNVDKRATYKLRVAIASATLAELQVRVNNPKSSRPLFSTGLIGRDNAIARHGCHGIYVLYSVSIPGIQLVV GENTIFLKQPRCTSP |
Full Sequence |
---|
Protein Sequence Length: 693 Download |
MRRSLRRIID CFSNSDGNRT ARKQGIKKAD QDIHCGQHAP KNNNCHKMAF QGVRLHIHDR 60 YVVMDNGILQ VTLSRPGGIV TGIRYGGIDN LLEVRNKETN RGYWDLHWNE PGGKGIFDVI 120 HGTSFRVIIE NEEQVELSFS RMWDPSLEGK FVPLSIDKRF IMLRGSSGFY SYAIYEHLEE 180 WPGFEIGETR IAFKLRKDKF RYMAIADNRQ RYMPLPDDLS KERCQTLDYP EAALLVHPTD 240 PQLQGEVDDK YQYSCENKDL RVHGWICFDP PIGFWQITPS DEFRSGGPLK QNLSSHVGPT 300 TLAMFLSAHY AGKYMMPHFK HGEPWKKVFG PVFIYLNSAA NRNDPFLLWE DAKMQMTIEV 360 ESWPYNFPAS EDYQKSEQRG NLSGRFLVYD RYICSEYILG QGAYVGLAPP GDVGSWQMES 420 KNYQFWSRAD ENGFFCIKNI RTGDYNLYAW IPGFIGDYCN NVIITITSGC NIEIGDIVYE 480 PPRDGPTLWE IGFPDRTAAK FYIPDPDPMH VNKLFINHPD RFRQYGLWKR YAQLYPHEDL 540 VYTVGVSDYR KDWFFAQVVR KKEDGTYQGT TWQIKFKLDN VDKRATYKLR VAIASATLAE 600 LQVRVNNPKS SRPLFSTGLI GRDNAIARHG CHGIYVLYSV SIPGIQLVVG ENTIFLKQPR 660 CTSPFQGIMY DYIRLEEPPA SEYSKEASCS SE* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd10316 | RGL4_M | 2.0e-29 | 378 | 477 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 7.0e-53 | 489 | 676 | 190 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 3.0e-77 | 53 | 339 | 293 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 2.0e-102 | 48 | 247 | 200 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI19298.1 | 0 | 48 | 680 | 1 | 646 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_172462.2 | 0 | 1 | 680 | 1 | 675 | lyase [Arabidopsis thaliana] |
RefSeq | XP_002306520.1 | 0 | 64 | 679 | 1 | 616 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527352.1 | 0 | 48 | 678 | 1 | 631 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527353.1 | 0 | 48 | 685 | 1 | 640 | lyase, putative [Ricinus communis] |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
EX302400 | 234 | 434 | 667 | 0 |
DY293973 | 353 | 48 | 394 | 0 |
DW479599 | 295 | 47 | 338 | 0 |
DW479600 | 298 | 47 | 341 | 0 |
GW864372 | 311 | 191 | 501 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|