Basic Information | |
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Species | Carica papaya |
Cazyme ID | evm.model.supercontig_180.28 |
Family | GH28 |
Protein Properties | Length: 489 Molecular Weight: 53557.8 Isoelectric Point: 5.4117 |
Chromosome | Chromosome/Scaffold: 180 Start: 449663 End: 452558 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 92 | 441 | 0 |
SSSGGSQLFVPPGKWLTGSFNLTSHFTLYLHRDAALLAVQDEREWPVIDPLPSYGRGRDAPGGRYVSLIFGTNLTDVVITGDNGTIDGQGAPWWQKFHRG KLKYTRPYLIEIMYSDGVQISDLTLLNSPSWHVHPVYSSNVIVKGLTILAPVTVPNTDGINPDSCTNTVIEDCYIVSGDDCIAIKSGWDEYGISFGMPTK QLAIRRLTCISPDSAVIALGSEMSGGIEDVRAEDIVAINSESGVRIKTGVGRGGYVKDIFVRRMVMQTMKYVFWITGNYGSHPDDKYNPNALPVIQNINY RDMVAENVTMAAQLQGIEGDVFSGICISNVTVGLSKKPKKIQWNCVDIEG |
Full Sequence |
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Protein Sequence Length: 489 Download |
MAVSEKPRRS LQVILFLVLV LVGLSVNGVE GRKKVKHHHD HDNDQIVANF EYSAINCRAH 60 NAVLTDFGAV GDGETLNTKA FQDAIDHLSQ FSSSGGSQLF VPPGKWLTGS FNLTSHFTLY 120 LHRDAALLAV QDEREWPVID PLPSYGRGRD APGGRYVSLI FGTNLTDVVI TGDNGTIDGQ 180 GAPWWQKFHR GKLKYTRPYL IEIMYSDGVQ ISDLTLLNSP SWHVHPVYSS NVIVKGLTIL 240 APVTVPNTDG INPDSCTNTV IEDCYIVSGD DCIAIKSGWD EYGISFGMPT KQLAIRRLTC 300 ISPDSAVIAL GSEMSGGIED VRAEDIVAIN SESGVRIKTG VGRGGYVKDI FVRRMVMQTM 360 KYVFWITGNY GSHPDDKYNP NALPVIQNIN YRDMVAENVT MAAQLQGIEG DVFSGICISN 420 VTVGLSKKPK KIQWNCVDIE GTTSGVVPPA CEQLSDKEPD TLVPCNFPED NLPIDNLELQ 480 TCSWHPKM* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 8.0e-18 | 46 | 350 | 316 | + polygalacturonase | ||
PLN02218 | PLN02218 | 5.0e-19 | 64 | 451 | 403 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 9.0e-24 | 64 | 350 | 298 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 1.0e-29 | 160 | 393 | 242 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 9.0e-54 | 62 | 357 | 319 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACC91278.1 | 0 | 50 | 482 | 55 | 487 | glycoside hydrolase family 28 protein [Capsella rubella] |
RefSeq | NP_194081.1 | 0 | 50 | 482 | 56 | 488 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002278930.1 | 0 | 26 | 487 | 27 | 478 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002301370.1 | 0 | 24 | 484 | 15 | 465 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002509850.1 | 0 | 1 | 483 | 1 | 474 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 64 | 427 | 30 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 64 | 427 | 30 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 64 | 427 | 30 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0 | 64 | 427 | 30 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 3e-17 | 78 | 397 | 26 | 336 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |