Basic Information | |
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Species | Carica papaya |
Cazyme ID | evm.model.supercontig_250.3 |
Family | GH28 |
Protein Properties | Length: 310 Molecular Weight: 32714.7 Isoelectric Point: 10.4713 |
Chromosome | Chromosome/Scaffold: 250 Start: 18289 End: 19959 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 49 | 279 | 0 |
WQAACSSTTAATINVPKGRYLLKAVTFRGPCKNSIKIQIAGTIVAPTDYRALGNSGYWILFIKVDKVSVIGGSLDGRAAGFWACRKSGKSCPVGARSITF NWANNIIISGLTSINSQVTHLVINSCNNVMIRDVKLIAPDQSPNTDGIHVQSSTGVTITGSTLQTGDDCVSIGPGTKNLVMSRLNCGPGHGVSIGSLGKD LNEAGVQNVTLIGSVFTGSDNGVRIKTWARA |
Full Sequence |
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Protein Sequence Length: 310 Download |
MAKLTATTLI ILFWIVMLFK FSSAAYDVTR YGAKPDGVTD STPAFLKAWQ AACSSTTAAT 60 INVPKGRYLL KAVTFRGPCK NSIKIQIAGT IVAPTDYRAL GNSGYWILFI KVDKVSVIGG 120 SLDGRAAGFW ACRKSGKSCP VGARSITFNW ANNIIISGLT SINSQVTHLV INSCNNVMIR 180 DVKLIAPDQS PNTDGIHVQS STGVTITGST LQTGDDCVSI GPGTKNLVMS RLNCGPGHGV 240 SIGSLGKDLN EAGVQNVTLI GSVFTGSDNG VRIKTWARAS NGITARSAHH HGKASIRAFL 300 RVLKYLPPT* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 2.0e-64 | 26 | 276 | 257 | + polygalacturonase | ||
PLN03003 | PLN03003 | 1.0e-64 | 13 | 284 | 283 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 2.0e-65 | 28 | 280 | 260 | + polygalacturonase ADPG | ||
PLN02188 | PLN02188 | 7.0e-71 | 9 | 290 | 297 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 8.0e-127 | 5 | 282 | 281 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_181917.1 | 0 | 3 | 283 | 5 | 286 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002275740.1 | 0 | 1 | 281 | 1 | 281 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002309713.1 | 0 | 1 | 291 | 1 | 292 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331634.1 | 0 | 1 | 283 | 1 | 284 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529098.1 | 0 | 1 | 280 | 1 | 278 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ib4_B | 5e-16 | 119 | 275 | 81 | 238 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
PDB | 1ib4_A | 5e-16 | 119 | 275 | 81 | 238 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
PDB | 1ia5_A | 5e-16 | 119 | 275 | 81 | 238 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
PDB | 2iq7_G | 0.00000000000003 | 119 | 285 | 77 | 244 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 0.00000000000003 | 119 | 285 | 77 | 244 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |