| Basic Information | |
|---|---|
| Species | Carica papaya |
| Cazyme ID | evm.model.supercontig_250.4 |
| Family | GH28 |
| Protein Properties | Length: 393 Molecular Weight: 41965.8 Isoelectric Point: 10.0603 |
| Chromosome | Chromosome/Scaffold: 250 Start: 21975 End: 23614 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 51 | 381 | 0 |
| SVACGSRNQATIYVPRGTFLIRNVVFGGPCKSRIVLQIDGSIVAPTSYWDLGNSGNWILFNKVSRIKIYGGSFDARGAGYWACRRSGKKCPAGARSISFN WSNNVLISGVTSINSQKMHISLNHCTNFLIRNVKIRAPSNSPNTDGIHMQASSGITVTGGSIATGDDCISIGQGSTNTWIERLNCGPGHGISIGSLGDFT NEEGVENVTVSGVGFTKAENGVRIKSWGRTSNGYARNINFRNLIMNNVNNPIIIDQNYCPSSSGCPRQSSGVKISGITYKNIKGISATQIAIKFDCSPTD PCTGIRLQDINLRYLGKSRSAISYCKNAHGR | |||
| Full Sequence |
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| Protein Sequence Length: 393 Download |
| MGKVLLASCT VVMIMLVFFT ESSSAAYNVV SYGAKGDGKK DSTAAFLRAW SVACGSRNQA 60 TIYVPRGTFL IRNVVFGGPC KSRIVLQIDG SIVAPTSYWD LGNSGNWILF NKVSRIKIYG 120 GSFDARGAGY WACRRSGKKC PAGARSISFN WSNNVLISGV TSINSQKMHI SLNHCTNFLI 180 RNVKIRAPSN SPNTDGIHMQ ASSGITVTGG SIATGDDCIS IGQGSTNTWI ERLNCGPGHG 240 ISIGSLGDFT NEEGVENVTV SGVGFTKAEN GVRIKSWGRT SNGYARNINF RNLIMNNVNN 300 PIIIDQNYCP SSSGCPRQSS GVKISGITYK NIKGISATQI AIKFDCSPTD PCTGIRLQDI 360 NLRYLGKSRS AISYCKNAHG RSSGVVLPKS CF* |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| pfam00295 | Glyco_hydro_28 | 2.0e-88 | 54 | 379 | 331 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
| PLN02218 | PLN02218 | 3.0e-91 | 16 | 389 | 384 | + polygalacturonase ADPG |
| PLN02793 | PLN02793 | 7.0e-104 | 22 | 392 | 379 | + Probable polygalacturonase |
| PLN02188 | PLN02188 | 2.0e-109 | 22 | 391 | 374 | + polygalacturonase/glycoside hydrolase family protein |
| PLN02155 | PLN02155 | 9.0e-162 | 10 | 392 | 385 | + polygalacturonase |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_181916.1 | 0 | 26 | 392 | 30 | 394 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | XP_002275740.1 | 0 | 1 | 391 | 1 | 388 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002331632.1 | 0 | 1 | 392 | 1 | 391 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002331634.1 | 0 | 11 | 392 | 9 | 390 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002529095.1 | 0 | 14 | 392 | 10 | 390 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 2e-19 | 145 | 308 | 152 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1rmg_A | 6e-19 | 20 | 380 | 14 | 355 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| PDB | 2iq7_G | 0.000000000000006 | 62 | 334 | 26 | 291 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 0.000000000000006 | 62 | 334 | 26 | 291 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 0.000000000000006 | 62 | 334 | 26 | 291 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DY281549 | 316 | 26 | 339 | 0 |
| CK276500 | 298 | 1 | 295 | 0 |
| FC899369 | 296 | 26 | 319 | 0 |
| JZ191937 | 301 | 92 | 392 | 0 |
| JZ193571 | 290 | 22 | 310 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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