Basic Information | |
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Species | Carica papaya |
Cazyme ID | evm.model.supercontig_250.6 |
Family | GH28 |
Protein Properties | Length: 398 Molecular Weight: 41925.7 Isoelectric Point: 9.1736 |
Chromosome | Chromosome/Scaffold: 250 Start: 35274 End: 37114 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 55 | 385 | 0 |
WKNACASARPATLYVPRGKFLLAGRIVFDGECRNSKMVVRIDGTLVAPADYRVLKDGGYWVLFQNVNGLSVYGGVLDGRGSGLWDCKKAGHSCPFGATSI GFLNSRNIVIDGLTSLNSQVFHIVIYGCNNVKLQGTKVSASGVSPNTDGIHVQMSSHVTILSSTIATGDDCVSIGPGTSTLWIENMACGPGHGISVGSLG KYSNEPGVQNVTVKSVSFTGTQNGARIKSWGRPSNGFAKNIIFQHVTMNNVQNPIVIDQNYCPGNVRCPGKISGIKVSDVTYEDIHGSSATEVAVNFDCS PERPCTGIKLRNVRLSYKNQKAEASCKHAGG |
Full Sequence |
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Protein Sequence Length: 398 Download |
MTTIRSHNLL LLLLPLLLLS SSATPSSATS THNVVAYGAK PGGTTDSRQA FLSAWKNACA 60 SARPATLYVP RGKFLLAGRI VFDGECRNSK MVVRIDGTLV APADYRVLKD GGYWVLFQNV 120 NGLSVYGGVL DGRGSGLWDC KKAGHSCPFG ATSIGFLNSR NIVIDGLTSL NSQVFHIVIY 180 GCNNVKLQGT KVSASGVSPN TDGIHVQMSS HVTILSSTIA TGDDCVSIGP GTSTLWIENM 240 ACGPGHGISV GSLGKYSNEP GVQNVTVKSV SFTGTQNGAR IKSWGRPSNG FAKNIIFQHV 300 TMNNVQNPIV IDQNYCPGNV RCPGKISGIK VSDVTYEDIH GSSATEVAVN FDCSPERPCT 360 GIKLRNVRLS YKNQKAEASC KHAGGTVSGT VQPNSCL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 3.0e-83 | 59 | 383 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 2.0e-88 | 31 | 393 | 369 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-92 | 37 | 397 | 368 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 2.0e-104 | 31 | 396 | 377 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 6.0e-136 | 33 | 397 | 366 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACH82233.1 | 0 | 1 | 397 | 1 | 397 | ripening-induced polygalacturonase [Carica papaya] |
DDBJ | BAC22689.1 | 0 | 13 | 397 | 14 | 398 | polygalacturonase [Pyrus communis] |
DDBJ | BAF42034.1 | 0 | 13 | 397 | 14 | 398 | polygalacturonase3 [Pyrus communis] |
EMBL | CAH18935.1 | 0 | 13 | 397 | 14 | 398 | polygalacturonase [Pyrus communis] |
RefSeq | XP_002529090.1 | 0 | 1 | 397 | 1 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-19 | 125 | 370 | 113 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_B | 0.00000000000001 | 130 | 342 | 84 | 294 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_A | 0.00000000000001 | 130 | 342 | 84 | 294 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ia5_A | 0.00000000000001 | 130 | 342 | 84 | 294 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
PDB | 1hg8_A | 0.0000000000001 | 127 | 364 | 78 | 326 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
AM904352 | 238 | 161 | 398 | 0 |
JZ191937 | 299 | 99 | 397 | 0 |
JZ194028 | 289 | 92 | 380 | 0 |
JZ192826 | 286 | 97 | 382 | 0 |
DY281549 | 317 | 31 | 346 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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