Basic Information | |
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Species | Carica papaya |
Cazyme ID | evm.model.supercontig_250.7 |
Family | GH28 |
Protein Properties | Length: 404 Molecular Weight: 42740.2 Isoelectric Point: 5.3855 |
Chromosome | Chromosome/Scaffold: 250 Start: 39527 End: 40989 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 59 | 388 | 0 |
WDKACGSRNPATMYVPAGMFLLRNVVFQGKCNNDAVSVIIDGTLVAPSDYKATAGSETWVLFDSVNGVSISGGTLDGQGAALWACKNSGHGCPRGTSTLR FINSENIEINGLTSKNSQLYHIVVEECSNVKMHGVKVSAAGDSPNTDGIHVESSNGVSIFNARIATGDDCVSVGPGTKSLWIQDVACGPGHGISIGSLGK EMNEAGVENVTVKTTTFSGTENGVRIKTWGKPSNGFARNIVFEDAVMNNVKNPIIIDQQYCPDDHCSQKVSGVKISEVTFEDIRGTSATEVGVKLDCSPT KPCTGIKMEDINLKYHNQPAEASCVNAEGT |
Full Sequence |
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Protein Sequence Length: 404 Download |
MANSLSYDHN ILILSLIILF FFLIMTPSSL ADPVSYNVMS YGAKPDGTTD STKAFSAAWD 60 KACGSRNPAT MYVPAGMFLL RNVVFQGKCN NDAVSVIIDG TLVAPSDYKA TAGSETWVLF 120 DSVNGVSISG GTLDGQGAAL WACKNSGHGC PRGTSTLRFI NSENIEINGL TSKNSQLYHI 180 VVEECSNVKM HGVKVSAAGD SPNTDGIHVE SSNGVSIFNA RIATGDDCVS VGPGTKSLWI 240 QDVACGPGHG ISIGSLGKEM NEAGVENVTV KTTTFSGTEN GVRIKTWGKP SNGFARNIVF 300 EDAVMNNVKN PIIIDQQYCP DDHCSQKVSG VKISEVTFED IRGTSATEVG VKLDCSPTKP 360 CTGIKMEDIN LKYHNQPAEA SCVNAEGTTS DIIQPMGRLC IRG* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 4.0e-92 | 38 | 395 | 368 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 5.0e-94 | 63 | 390 | 331 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 1.0e-94 | 28 | 385 | 368 | + polygalacturonase ADPG | ||
PLN02188 | PLN02188 | 6.0e-115 | 36 | 385 | 357 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 8.0e-131 | 29 | 395 | 369 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAC64184.1 | 0 | 13 | 399 | 7 | 393 | endopolygalacturonase [Prunus persica] |
GenBank | ABC72324.1 | 0 | 13 | 399 | 7 | 393 | endo-polygalacturonase [Prunus persica] |
GenBank | ABD33834.1 | 0 | 13 | 399 | 7 | 393 | polygalacturonase [Prunus domestica subsp. insititia] |
GenBank | ABV32553.1 | 0 | 13 | 399 | 7 | 393 | endopolygalacturonase [Prunus persica] |
RefSeq | XP_002529090.1 | 0 | 1 | 395 | 1 | 389 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 3e-18 | 131 | 371 | 117 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1czf_B | 5e-17 | 63 | 382 | 45 | 362 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1czf_A | 5e-17 | 63 | 382 | 45 | 362 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1nhc_F | 7e-17 | 130 | 382 | 77 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 7e-17 | 130 | 382 | 77 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |