Basic Information | |
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Species | Carica papaya |
Cazyme ID | evm.model.supercontig_259.7 |
Family | GH28 |
Protein Properties | Length: 287 Molecular Weight: 31209.3 Isoelectric Point: 7.7341 |
Chromosome | Chromosome/Scaffold: 259 Start: 47849 End: 50017 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 28 | 273 | 0 |
WPWLSLVVNETCPRPRALYLHECNNLELRGLTHLNSQRNHIAIHQCNHVSISDLHIIAPKTSPNTDGIDLSSSSQINISHSFIGTGDDCIAIKGGTSHIY ITDVTCGPGHGISVGSLGDDQDNRVKEVYVQHCTLNSTQNGVRIKTIQGGSGYARVISFKDVTFIDSKNPIIIDQHYVDKHISQISEVNVSGVTYSGLQG TSIDEIAINLNCSSIGCEGIVMEEVNITSSVPGKKTYSYCKNAKGK |
Full Sequence |
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Protein Sequence Length: 287 Download |
MESMRSRILA VLLSCGWSHH KRNRKNRWPW LSLVVNETCP RPRALYLHEC NNLELRGLTH 60 LNSQRNHIAI HQCNHVSISD LHIIAPKTSP NTDGIDLSSS SQINISHSFI GTGDDCIAIK 120 GGTSHIYITD VTCGPGHGIS VGSLGDDQDN RVKEVYVQHC TLNSTQNGVR IKTIQGGSGY 180 ARVISFKDVT FIDSKNPIII DQHYVDKHIS QISEVNVSGV TYSGLQGTSI DEIAINLNCS 240 SIGCEGIVME EVNITSSVPG KKTYSYCKNA KGKSISTVPD VPCLSG* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 2.0e-55 | 42 | 278 | 241 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 4.0e-59 | 42 | 271 | 234 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 6.0e-62 | 24 | 285 | 270 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 8.0e-64 | 41 | 285 | 256 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 1.0e-71 | 44 | 274 | 236 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAY21049.1 | 0 | 29 | 285 | 142 | 397 | PGN [Glycine max] |
GenBank | ABO81149.1 | 0 | 39 | 285 | 117 | 369 | Glycoside hydrolase, family 28 [Medicago truncatula] |
RefSeq | XP_002324855.1 | 0 | 44 | 285 | 150 | 395 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002332134.1 | 0 | 44 | 285 | 118 | 361 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515526.1 | 0 | 43 | 286 | 146 | 394 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 3e-24 | 24 | 269 | 83 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 3e-24 | 24 | 269 | 83 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 3e-24 | 24 | 269 | 83 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 3e-24 | 24 | 269 | 83 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 3e-24 | 24 | 269 | 83 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EY474520 | 246 | 42 | 285 | 0 |
CV536748 | 212 | 29 | 239 | 0 |
GT141262 | 230 | 58 | 285 | 0 |
GO025017 | 205 | 82 | 284 | 0 |
DR923379 | 216 | 73 | 284 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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