Basic Information | |
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Species | Carica papaya |
Cazyme ID | evm.model.supercontig_28.9 |
Family | GH28 |
Protein Properties | Length: 415 Molecular Weight: 45902.3 Isoelectric Point: 9.2523 |
Chromosome | Chromosome/Scaffold: 28 Start: 143507 End: 150455 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 262 | 409 | 1.80067e-42 |
IDHNSCEDMVIENCYISVGDDAIAIKSGWDQYGIAYGRPSTNILIRNLIVRSMVSAGVSIGSEMSGGVSNVTVENLLVWSSRRAVRIKTAPGRGGYVRQI TYRNLTFDTVRVGIVIKTDYNEHPDNGYDPKAVPILKDISFTGIHGQD |
Full Sequence |
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Protein Sequence Length: 415 Download |
MVETLPLGRF QLQQQRLEVK RCVSTFLSSH KTLFTVLWIA AFASVFVWQR NVVGGGFSIF 60 GRGLPNRPMP RMRPVAFNLT DFGAVGDGVT LNTEAFERAV FAISKLGKRG GGQLNVPPGR 120 WLTAPFNLTS HMTLFLAEDS EILGVQDEKY WPLLPPLPSY GYGREHPGAR YGSLIHGQNL 180 KDIVITGHNG TINGQGQTWW KKYRQSFSTT LGSSSADNVR TCLTQDETCK LKLTSSNATE 240 ANFDIVLLLI ELALELRIFP KIDHNSCEDM VIENCYISVG DDAIAIKSGW DQYGIAYGRP 300 STNILIRNLI VRSMVSAGVS IGSEMSGGVS NVTVENLLVW SSRRAVRIKT APGRGGYVRQ 360 ITYRNLTFDT VRVGIVIKTD YNEHPDNGYD PKAVPILKDI SFTGIHGQDV RVPVX 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 5.0e-10 | 74 | 407 | 358 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 8.0e-15 | 64 | 407 | 370 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 8.0e-20 | 175 | 408 | 246 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03003 | PLN03003 | 7.0e-20 | 76 | 393 | 334 | + Probable polygalacturonase At3g15720 | ||
COG5434 | PGU1 | 5.0e-47 | 76 | 392 | 351 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN69988.1 | 0 | 1 | 414 | 1 | 433 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002277239.1 | 0 | 1 | 414 | 1 | 417 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002324728.1 | 0 | 1 | 414 | 1 | 419 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002326133.1 | 0 | 1 | 414 | 1 | 419 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002516244.1 | 0 | 1 | 414 | 2 | 418 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 2e-30 | 70 | 384 | 21 | 369 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 2e-30 | 70 | 384 | 21 | 369 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 2e-30 | 70 | 384 | 21 | 369 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 2e-30 | 70 | 384 | 21 | 369 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 2uvf_B | 0.0000001 | 34 | 414 | 115 | 541 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO778855 | 420 | 1 | 414 | 0 |
FE707848 | 302 | 78 | 373 | 0 |
ES817974 | 311 | 56 | 354 | 0 |
FC892952 | 310 | 9 | 309 | 0 |
ES817974 | 67 | 353 | 413 | 0.00000000000004 |
Sequence Alignments (This image is cropped. Click for full image.) |
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