Basic Information | |
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Species | Carica papaya |
Cazyme ID | evm.model.supercontig_3.26 |
Family | CE8 |
Protein Properties | Length: 370 Molecular Weight: 41131.1 Isoelectric Point: 9.7646 |
Chromosome | Chromosome/Scaffold: 3 Start: 178084 End: 179516 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 73 | 358 | 0 |
RVRKDGAGDFKTINAAIKSVPLANKKRVIIWIGSGDYHEKVCVDRNKPFITLYGEPGKLTRILFDDTAEKRGTFDSATLIALPDYFMAVNLVIVNSAPMP DYKKTKGPQALAMRIDGNWAAFYNCRFIGFQDTLCDDRGSHFFKDCYVEGTVDFIFGRGTSLYLNTEIHVVETNGLRVITAQGRNSAKESTGYLFAHCRI TGKGTGIYLGRAWRAAPKVVYAYTDMSNVVHPEGWSHNFRPERAHTVFYGEYKCTGAGASHVGRVKYTKQLTDAEARTFLTLEYIQ |
Full Sequence |
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Protein Sequence Length: 370 Download |
MSNSTRSRSN YGFKAIILAI LTTATVVTSR SPIPSDGKKL ESWFKENVKP ASQRKGTLDP 60 LLAEAEVEPT IIRVRKDGAG DFKTINAAIK SVPLANKKRV IIWIGSGDYH EKVCVDRNKP 120 FITLYGEPGK LTRILFDDTA EKRGTFDSAT LIALPDYFMA VNLVIVNSAP MPDYKKTKGP 180 QALAMRIDGN WAAFYNCRFI GFQDTLCDDR GSHFFKDCYV EGTVDFIFGR GTSLYLNTEI 240 HVVETNGLRV ITAQGRNSAK ESTGYLFAHC RITGKGTGIY LGRAWRAAPK VVYAYTDMSN 300 VVHPEGWSHN FRPERAHTVF YGEYKCTGAG ASHVGRVKYT KQLTDAEART FLTLEYIQAS 360 KWLLPPPKV* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02773 | PLN02773 | 2.0e-77 | 71 | 364 | 310 | + pectinesterase | ||
PLN02432 | PLN02432 | 1.0e-87 | 71 | 363 | 293 | + putative pectinesterase | ||
PLN02304 | PLN02304 | 3.0e-89 | 70 | 365 | 304 | + probable pectinesterase | ||
PLN02682 | PLN02682 | 4.0e-105 | 16 | 365 | 362 | + pectinesterase family protein | ||
PLN02665 | PLN02665 | 0 | 15 | 368 | 354 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAB09012.1 | 0 | 31 | 367 | 28 | 362 | pectin methylesterase-like protein [Arabidopsis thaliana] |
EMBL | CAB87930.1 | 0 | 31 | 369 | 8 | 342 | pectin methyl-esterase-like protein [Arabidopsis thaliana] |
RefSeq | NP_177152.2 | 0 | 15 | 369 | 11 | 361 | PPME1; pectinesterase [Arabidopsis thaliana] |
RefSeq | NP_568181.1 | 0 | 17 | 369 | 12 | 361 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002309337.1 | 0 | 11 | 367 | 9 | 367 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 4.06377e-44 | 64 | 363 | 2 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 3e-36 | 74 | 363 | 7 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 2e-21 | 82 | 359 | 18 | 331 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 2e-21 | 82 | 359 | 18 | 331 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 2e-21 | 82 | 359 | 18 | 331 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |