Basic Information | |
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Species | Carica papaya |
Cazyme ID | evm.model.supercontig_3.28 |
Family | CE8 |
Protein Properties | Length: 372 Molecular Weight: 41020.7 Isoelectric Point: 7.0863 |
Chromosome | Chromosome/Scaffold: 3 Start: 182004 End: 183449 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 75 | 361 | 0 |
KVKKDGSGDFKTINEAIKSIPAGNKKRVIVWIGSGDYSEKVCIDRNKPFITLFGEPGKTPRIMFDDTAAETGTFESATLIALPDYFMAVNLIIINSSPRP DYSKTKGPQALATRIDGNWAAFYSCRFIGFQDTLCDDRGFHFFKDCYVEGTVDFIFGRGTSLYLNTEIHVVDDKGLRVITAQGRNSASDSTGYSFVHCKI TGSGTGIYLGRAWMAAPKVVYIYTDMGPVVHPEGWSTNFKPEREDTVFYGEYKCTGPGASTEGRVDYTKQLTNADAQVFLALDYIQG |
Full Sequence |
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Protein Sequence Length: 372 Download |
MGISTRSRHN HGFEATLLII VMIATIIRPN ESTTIPAEKG KIESWFNENV KPASNRKGTL 60 DPVLAEAEVE PTIIKVKKDG SGDFKTINEA IKSIPAGNKK RVIVWIGSGD YSEKVCIDRN 120 KPFITLFGEP GKTPRIMFDD TAAETGTFES ATLIALPDYF MAVNLIIINS SPRPDYSKTK 180 GPQALATRID GNWAAFYSCR FIGFQDTLCD DRGFHFFKDC YVEGTVDFIF GRGTSLYLNT 240 EIHVVDDKGL RVITAQGRNS ASDSTGYSFV HCKITGSGTG IYLGRAWMAA PKVVYIYTDM 300 GPVVHPEGWS TNFKPEREDT VFYGEYKCTG PGASTEGRVD YTKQLTNADA QVFLALDYIQ 360 GTKWLLPPPK V* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02773 | PLN02773 | 7.0e-75 | 73 | 359 | 300 | + pectinesterase | ||
PLN02304 | PLN02304 | 4.0e-84 | 72 | 367 | 304 | + probable pectinesterase | ||
PLN02432 | PLN02432 | 6.0e-87 | 73 | 365 | 293 | + putative pectinesterase | ||
PLN02682 | PLN02682 | 5.0e-101 | 72 | 367 | 303 | + pectinesterase family protein | ||
PLN02665 | PLN02665 | 0 | 15 | 370 | 356 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAB09012.1 | 0 | 30 | 369 | 25 | 362 | pectin methylesterase-like protein [Arabidopsis thaliana] |
EMBL | CAB87930.1 | 0 | 26 | 371 | 1 | 342 | pectin methyl-esterase-like protein [Arabidopsis thaliana] |
RefSeq | NP_177152.2 | 0 | 18 | 371 | 12 | 361 | PPME1; pectinesterase [Arabidopsis thaliana] |
RefSeq | NP_568181.1 | 0 | 18 | 371 | 12 | 361 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002277202.1 | 0 | 30 | 369 | 26 | 364 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 1.00053e-42 | 66 | 365 | 2 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 1e-36 | 76 | 365 | 7 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 3e-17 | 73 | 353 | 8 | 328 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 3e-17 | 73 | 353 | 8 | 328 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 3e-17 | 73 | 353 | 8 | 328 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DY300112 | 297 | 35 | 331 | 0 |
DY300051 | 301 | 35 | 335 | 0 |
DY275544 | 349 | 11 | 351 | 0 |
EX253127 | 214 | 109 | 322 | 0 |
DY263772 | 305 | 35 | 339 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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