| Basic Information | |
|---|---|
| Species | Carica papaya |
| Cazyme ID | evm.model.supercontig_33.89 |
| Family | PL1 |
| Protein Properties | Length: 404 Molecular Weight: 44270 Isoelectric Point: 8.6076 |
| Chromosome | Chromosome/Scaffold: 33 Start: 830709 End: 832162 |
| Description | Pectate lyase family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 117 | 322 | 0 |
| IQDEPLWIIFKRDMVIKLKQELLMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGINIHDCKRGGNAYVRDSPSHYGWRTISDGDGVSIFGGSHVWVD HCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRIPRCRHGYFHVVNNDYTHWLMYAIGGSAAPTINSQ GNRFLA | |||
| Full Sequence |
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| Protein Sequence Length: 404 Download |
| MEIPFNFLIT LLVLAPTLVS SSSAVQDPEL VVQQVQESIN ASRRNLGFLS CVTGNPIDDC 60 WRCDTNWEKN RKRLADCGIG FGKHAIGGRD GKIYVVTDPS DSDPVNPKPG TLRHAVIQDE 120 PLWIIFKRDM VIKLKQELLM NSFKTIDGRG ASVHIAGGPC ITIQYVTNII IHGINIHDCK 180 RGGNAYVRDS PSHYGWRTIS DGDGVSIFGG SHVWVDHCSL SNCNDGLIDA IHGSTAITIS 240 NNYMTHHNKV MLLGHSDSYT QDKNMQVTIA FNHFGEGLVQ RIPRCRHGYF HVVNNDYTHW 300 LMYAIGGSAA PTINSQGNRF LAPNNQNSKE VTKRENTSQS KWKKWNWRSE GDLMLNGAFF 360 TPSGAGASSS YAKASSLSAR SSSLVTSITA GAGALKCWKG SRC* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 3.0e-26 | 142 | 320 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 3.0e-71 | 135 | 320 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 5.0e-79 | 129 | 324 | 207 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAM67091.1 | 0 | 16 | 403 | 20 | 406 | putative pectate lyase [Arabidopsis thaliana] |
| DDBJ | BAB59066.1 | 0 | 21 | 403 | 27 | 409 | pectate lyase [Salix gilgiana] |
| RefSeq | NP_564906.1 | 0 | 16 | 403 | 22 | 408 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002285340.1 | 0 | 21 | 403 | 21 | 403 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002515037.1 | 0 | 14 | 403 | 15 | 404 | Pectate lyase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 55 | 395 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 55 | 395 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 3e-18 | 124 | 322 | 50 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1pe9_B | 1e-17 | 184 | 397 | 120 | 361 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1pe9_A | 1e-17 | 184 | 397 | 120 | 361 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| FG606120 | 337 | 25 | 361 | 0 |
| HO778688 | 388 | 19 | 404 | 0 |
| DY278910 | 362 | 1 | 360 | 0 |
| DY272271 | 347 | 1 | 346 | 0 |
| JG581707 | 329 | 1 | 329 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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