y
Basic Information | |
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Species | Carica papaya |
Cazyme ID | evm.model.supercontig_333.3 |
Family | GH28 |
Protein Properties | Length: 229 Molecular Weight: 25349.6 Isoelectric Point: 9.5482 |
Chromosome | Chromosome/Scaffold: 333 Start: 22356 End: 23130 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 3 | 213 | 0 |
TNAVVHYITSLNSKNFHINVLGCKNITFHHVNIMAPDESPNTIDIHLGRSNGIVITNSIISTGNDCISIVDGTKNLNITKVVCGPGHGISLRSLGKYNNE EPVKGISVVNCTLRNTMNGVRIKTWPSIPIKLNVSKLHFENIMMENISSPIFIDQQYCPHNFCKLQSPSLVKINDAVFKNIRCTSTTKVVANFACNSACH ARILRLVTLTS |
Full Sequence |
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Protein Sequence Length: 229 Download |
MLTNAVVHYI TSLNSKNFHI NVLGCKNITF HHVNIMAPDE SPNTIDIHLG RSNGIVITNS 60 IISTGNDCIS IVDGTKNLNI TKVVCGPGHG ISLRSLGKYN NEEPVKGISV VNCTLRNTMN 120 GVRIKTWPSI PIKLNVSKLH FENIMMENIS SPIFIDQQYC PHNFCKLQSP SLVKINDAVF 180 KNIRCTSTTK VVANFACNSA CHARILRLVT LTSYTMERKV LLYLRVLI* 240 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 7.0e-43 | 2 | 211 | 212 | + polygalacturonase ADPG | ||
PLN02155 | PLN02155 | 5.0e-44 | 4 | 212 | 211 | + polygalacturonase | ||
PLN02793 | PLN02793 | 1.0e-50 | 7 | 215 | 212 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 5.0e-66 | 2 | 197 | 196 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 7.0e-70 | 4 | 211 | 210 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI22050.1 | 0 | 1 | 200 | 154 | 352 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002282563.1 | 0 | 1 | 208 | 154 | 360 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002282573.1 | 0 | 1 | 200 | 154 | 352 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002282594.1 | 0 | 1 | 202 | 154 | 356 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002329175.1 | 0 | 1 | 211 | 153 | 362 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 0.00000000001 | 4 | 192 | 161 | 340 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 0.0000000004 | 43 | 186 | 152 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.0000000004 | 43 | 186 | 152 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.0000000004 | 43 | 186 | 152 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 0.0000000004 | 43 | 186 | 152 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EC944002 | 208 | 1 | 208 | 0 |
GR461246 | 197 | 1 | 197 | 0 |
GR460346 | 197 | 1 | 197 | 0 |
GR462094 | 200 | 1 | 200 | 0 |
GR458186 | 197 | 1 | 197 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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