Basic Information | |
---|---|
Species | Carica papaya |
Cazyme ID | evm.model.supercontig_4.214 |
Family | AA3 |
Protein Properties | Length: 568 Molecular Weight: 62535.4 Isoelectric Point: 6.6148 |
Chromosome | Chromosome/Scaffold: 4 Start: 3751894 End: 3753859 |
Description | Glucose-methanol-choline (GMC) oxidoreductase family protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
AA3 | 48 | 566 | 0 |
SYFDYIIIGGGTSGCPLAATLSQNATVLLLERGGSPYTFPETTDTINFARTLSDISPSSPAQHFVSEDGVYNARARVLGGGSVINAGFYTRASDKYVKEA GWKPGLVKSSYEWVERKVAFEPPMLQWQSAVRDGLIEVGVLPYNGFTFDHLYGTKVGGTIFDRNGHRHTAADLLEYADPTRTVVYLHATVQKILFATKGR LRPRAYGVIFIDESGATHRVELLENYKNEIILSSGAIGSPQLLMLSGIGPSQHLRVHDIDVLLDQPMVGRGMADNPMNALFIPSPLPVEVSLIQVVGITS FDSYIEAASGLTFASSWAHRLFDELASLTNQTGKKPIEMPPDSIMADILRDWSSADTQPNATMGGGVILEKIMGPISSGHLELRTTNPNDNPSVTFNYFQ EPEDLRRCVEGMTTITNVINSHSFSRFRFKEMTVRGLINLMLTLPVNTRPKHASAAFSLEQFCKDTVMTIWHYHGGCQVGRVVDHNYRVFGVDGLRVIDG STFYRSPGTNPQATVMMLG |
Full Sequence |
---|
Protein Sequence Length: 568 Download |
MGLLSWWIFT ANLLLLLLLL LDFHGICYSE KAPYYTFVKE ATSAPPISYF DYIIIGGGTS 60 GCPLAATLSQ NATVLLLERG GSPYTFPETT DTINFARTLS DISPSSPAQH FVSEDGVYNA 120 RARVLGGGSV INAGFYTRAS DKYVKEAGWK PGLVKSSYEW VERKVAFEPP MLQWQSAVRD 180 GLIEVGVLPY NGFTFDHLYG TKVGGTIFDR NGHRHTAADL LEYADPTRTV VYLHATVQKI 240 LFATKGRLRP RAYGVIFIDE SGATHRVELL ENYKNEIILS SGAIGSPQLL MLSGIGPSQH 300 LRVHDIDVLL DQPMVGRGMA DNPMNALFIP SPLPVEVSLI QVVGITSFDS YIEAASGLTF 360 ASSWAHRLFD ELASLTNQTG KKPIEMPPDS IMADILRDWS SADTQPNATM GGGVILEKIM 420 GPISSGHLEL RTTNPNDNPS VTFNYFQEPE DLRRCVEGMT TITNVINSHS FSRFRFKEMT 480 VRGLINLMLT LPVNTRPKHA SAAFSLEQFC KDTVMTIWHY HGGCQVGRVV DHNYRVFGVD 540 GLRVIDGSTF YRSPGTNPQA TVMMLGR* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
TIGR01810 | betA | 2.0e-22 | 51 | 322 | 314 | + choline dehydrogenase. Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified [Cellular processes, Adaptations to atypical conditions]. | ||
pfam05199 | GMC_oxred_C | 1.0e-24 | 422 | 566 | 150 | + GMC oxidoreductase. This domain found associated with pfam00732. | ||
TIGR03970 | Rv0697 | 1.0e-34 | 51 | 566 | 555 | + dehydrogenase, Rv0697 family. This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function. | ||
COG2303 | BetA | 1.0e-44 | 50 | 567 | 568 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | ||
PLN02785 | PLN02785 | 0 | 35 | 567 | 545 | + Protein HOTHEAD |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAB11043.1 | 0 | 1 | 567 | 1 | 563 | mandelonitrile lyase-like protein [Arabidopsis thaliana] |
EMBL | CBI34759.1 | 0 | 24 | 567 | 21 | 561 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_200008.1 | 0 | 1 | 567 | 1 | 566 | glucose-methanol-choline (GMC) oxidoreductase family protein [Arabidopsis thaliana] |
RefSeq | XP_002298074.1 | 0 | 4 | 567 | 3 | 559 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002510860.1 | 0 | 7 | 567 | 6 | 560 | glucose-methanol-choline (gmc) oxidoreductase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3gdp_B | 0 | 34 | 567 | 11 | 507 | A Chain A, Arabidopsis Thaliana Peroxidase A2 |
PDB | 3gdp_A | 0 | 34 | 567 | 11 | 507 | A Chain A, Arabidopsis Thaliana Peroxidase A2 |
PDB | 3gdn_B | 0 | 34 | 567 | 11 | 507 | A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde |
PDB | 3gdn_A | 0 | 34 | 567 | 11 | 507 | A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde |
PDB | 1ju2_B | 0 | 34 | 567 | 11 | 507 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
Metabolic Pathways | |||
---|---|---|---|
Pathway Name | Reaction | EC | Protein Name |
cutin biosynthesis | RXN-2121 | EC-1.1.1 | 18-hydroxyoleate dehydrogenase |
cutin biosynthesis | RXN-9802 | EC-1.1.1 | 16-hydroxypalmitate dehydrogenase |
suberin biosynthesis | RXN-2121 | EC-1.1.1 | 18-hydroxyoleate dehydrogenase |