| Basic Information | |
|---|---|
| Species | Carica papaya |
| Cazyme ID | evm.model.supercontig_4.36 |
| Family | PL1 |
| Protein Properties | Length: 406 Molecular Weight: 44788.3 Isoelectric Point: 6.8839 |
| Chromosome | Chromosome/Scaffold: 4 Start: 1066065 End: 1067597 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 120 | 324 | 0 |
| QDEPLWIIFQRDMTINLKEELIMNSFKTIDGRGVSVHIAGGPCITIQYVTNIIIHGLNIHDCKQGGNTYVRDSPHHYGWRTISDGDGVSIFGGSHIWVDH NSLSNCHDGLIDAIHGSNFITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQG NRFLA | |||
| Full Sequence |
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| Protein Sequence Length: 406 Download |
| MAISSLSLFF FLTCLLIPTL ISCNSPVQDP ELVVQQVHRS INESRRNLGY LSCGTGNPID 60 DCWRCDANWE KNRQRLADCA IGFGKNAIGG RDGKIYVVTD PGDDDVVNPK PGTLRYAVIQ 120 DEPLWIIFQR DMTINLKEEL IMNSFKTIDG RGVSVHIAGG PCITIQYVTN IIIHGLNIHD 180 CKQGGNTYVR DSPHHYGWRT ISDGDGVSIF GGSHIWVDHN SLSNCHDGLI DAIHGSNFIT 240 ISNNYMTHHD KVMLLGHSDS YTQDKNMQVT IAFNHFGEGL VQRMPRCRHG YFHVVNNDYT 300 HWEMYAIGGS ANPTINSQGN RFLAPNDRFS KEVTKHEDAP ESEWKNWNWR SEGDLMMNGA 360 FFTPSGAGAS SSYAKASSLG ARPSSLVGAI TTSAGALSCK KGSRC* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 9.0e-29 | 144 | 322 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 1.0e-72 | 137 | 322 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 7.0e-80 | 131 | 326 | 207 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ADB90475.1 | 0 | 28 | 405 | 34 | 411 | pectate lyase [Gossypium herbaceum] |
| EMBL | CAN76500.1 | 0 | 18 | 405 | 17 | 403 | hypothetical protein [Vitis vinifera] |
| EMBL | CBI14899.1 | 0 | 18 | 405 | 17 | 403 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002275781.1 | 0 | 18 | 405 | 72 | 458 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002322215.1 | 0 | 18 | 405 | 17 | 403 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 57 | 398 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 57 | 398 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 2e-18 | 76 | 323 | 2 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 6e-17 | 202 | 322 | 187 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 1pe9_B | 3e-16 | 186 | 396 | 120 | 358 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| FG606120 | 338 | 26 | 363 | 0 |
| DY272271 | 348 | 1 | 348 | 0 |
| DY278910 | 362 | 1 | 362 | 0 |
| HO778688 | 384 | 25 | 406 | 0 |
| DY267635 | 362 | 1 | 362 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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