| Basic Information | |
|---|---|
| Species | Carica papaya |
| Cazyme ID | evm.model.supercontig_42.185 |
| Family | PL1 |
| Protein Properties | Length: 352 Molecular Weight: 39468.1 Isoelectric Point: 9.7118 |
| Chromosome | Chromosome/Scaffold: 42 Start: 1955748 End: 1957214 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL1 | 70 | 271 | 0 |
| KVWITFQSDMRIYLQKPILISSFTVIDGRGASVHVIGPACLIIYKATDVIIHGIRIHHCRPRPVASVVGPDSQIIQMGQVDGDAIRLVTAKKVWIDHNTL YECHDGLLDVTRGTKDVTISNNWFRNQDKVMLLGHDDGYLRDKNMKVTVAFNHFGPNCNQRMPKVRHGYAHVANNLYLGWTQYAIGGSMNPTVKSEANFF IA | |||
| Full Sequence |
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| Protein Sequence Length: 352 Download |
| MNVIDKCWRW NPHWRNDRQQ LALCSVGFAG KMINNTGHDL VYYEVIDSSD DPLNPKPGTL 60 RYGATIIKGK VWITFQSDMR IYLQKPILIS SFTVIDGRGA SVHVIGPACL IIYKATDVII 120 HGIRIHHCRP RPVASVVGPD SQIIQMGQVD GDAIRLVTAK KVWIDHNTLY ECHDGLLDVT 180 RGTKDVTISN NWFRNQDKVM LLGHDDGYLR DKNMKVTVAF NHFGPNCNQR MPKVRHGYAH 240 VANNLYLGWT QYAIGGSMNP TVKSEANFFI AVPQGNKEVT WRKHNKKDKG GWNLYSVRDY 300 FKNGASFTQS GLGGVRPNYD AQQTFQVSDV KSVRVSTESA GALRCTKTSI C* 360 |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 2.0e-25 | 65 | 343 | 302 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 9.0e-55 | 91 | 269 | 187 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 1.0e-64 | 78 | 273 | 207 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI26401.1 | 0 | 32 | 351 | 1 | 320 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002267384.1 | 0 | 1 | 351 | 19 | 369 | PREDICTED: similar to putative Cup s 1 pollen allergen [Vitis vinifera] |
| RefSeq | XP_002299118.1 | 0 | 1 | 351 | 1 | 354 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002304865.1 | 0 | 1 | 351 | 1 | 352 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527354.1 | 0 | 1 | 279 | 29 | 307 | Major pollen allergen Jun v 1 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 2 | 343 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 2 | 343 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3vmw_A | 0.000000000000003 | 44 | 280 | 33 | 257 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3vmv_A | 0.000000000000003 | 44 | 280 | 33 | 257 | A Chain A, Crystal Structure Of Pectate Lyase Bsp165pela From Bacillus Sp. N165 |
| PDB | 1vbl_A | 0.00000000000001 | 87 | 269 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| DR808308 | 255 | 2 | 249 | 0 |
| DT575750 | 225 | 123 | 346 | 0 |
| FD757999 | 215 | 85 | 299 | 0 |
| HO778688 | 354 | 2 | 352 | 0 |
| FG606120 | 311 | 2 | 309 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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