Basic Information | |
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Species | Carica papaya |
Cazyme ID | evm.model.supercontig_48.188 |
Family | GH28 |
Protein Properties | Length: 408 Molecular Weight: 43159.4 Isoelectric Point: 5.5764 |
Chromosome | Chromosome/Scaffold: 48 Start: 1070298 End: 1071784 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 48 | 381 | 0 |
KAACDAPTKSKIIIPKGTFPLSKITLAGPCKAPVEVEVLGTVQAPADTKSFVGLDSWITFSYMDGFTLSGTGTFDGQGASAWEVNNCHKSQECVKLPIGI RFDFITNGVVQDITSLNAKYFHFNVLGCKNFVFQHVTITAPETSVNTDGIHIGRSDGLIVTDTNIATGDDCISIGDGTKNLTVTNVICGPGHGLAIGSLG RQAKEEPVDLITMQHCTVKKAMFGVRIKSWPSAPGKPTVSNIRFEDITMEDVSTPMLIDQEYCPHNLCNLKSPSLVKISNVIFKGIRGTSSTRVVASLAC SSGAPCENIEVGDIDLKYTGKDGPALFTCSNVKP |
Full Sequence |
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Protein Sequence Length: 408 Download |
MGCVKFHLLL LFLTVLMASH AEAEDFDITK HGATPDEDIT QALSDAFKAA CDAPTKSKII 60 IPKGTFPLSK ITLAGPCKAP VEVEVLGTVQ APADTKSFVG LDSWITFSYM DGFTLSGTGT 120 FDGQGASAWE VNNCHKSQEC VKLPIGIRFD FITNGVVQDI TSLNAKYFHF NVLGCKNFVF 180 QHVTITAPET SVNTDGIHIG RSDGLIVTDT NIATGDDCIS IGDGTKNLTV TNVICGPGHG 240 LAIGSLGRQA KEEPVDLITM QHCTVKKAMF GVRIKSWPSA PGKPTVSNIR FEDITMEDVS 300 TPMLIDQEYC PHNLCNLKSP SLVKISNVIF KGIRGTSSTR VVASLACSSG APCENIEVGD 360 IDLKYTGKDG PALFTCSNVK PILSGKQDPP ACTEQAGADL PAAAASA* |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
PLN02218 | PLN02218 | 4.0e-69 | 28 | 380 | 360 | + polygalacturonase ADPG |
PLN02793 | PLN02793 | 3.0e-76 | 25 | 392 | 374 | + Probable polygalacturonase |
PLN02155 | PLN02155 | 5.0e-81 | 26 | 392 | 373 | + polygalacturonase |
pfam00295 | Glyco_hydro_28 | 1.0e-110 | 51 | 380 | 330 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
PLN02188 | PLN02188 | 2.0e-121 | 26 | 393 | 370 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABN13878.1 | 0 | 6 | 393 | 5 | 387 | polygalacturonase [Brassica rapa subsp. campestris] |
DDBJ | BAA89477.1 | 0 | 18 | 392 | 20 | 393 | polygalacturonase [Salix gilgiana] |
EMBL | CAA05892.1 | 0 | 6 | 396 | 5 | 390 | polygalacturonase [Arabidopsis thaliana] |
RefSeq | NP_187439.1 | 0 | 6 | 396 | 5 | 390 | polygalacturonase 3 (PGA3) / pectinase [Arabidopsis thaliana] |
RefSeq | NP_187440.1 | 0 | 6 | 393 | 5 | 388 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-19 | 73 | 345 | 53 | 343 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1hg8_A | 0.00000000000003 | 193 | 336 | 165 | 304 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 2iq7_G | 0.00000000000006 | 193 | 379 | 153 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 0.00000000000006 | 193 | 379 | 153 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 0.00000000000006 | 193 | 379 | 153 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GR462194 | 277 | 100 | 376 | 0 |
GR463354 | 273 | 121 | 393 | 0 |
EL587166 | 278 | 110 | 387 | 0 |
CX190311 | 268 | 125 | 392 | 0 |
GR459976 | 263 | 131 | 393 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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