| Basic Information | |
|---|---|
| Species | Carica papaya |
| Cazyme ID | evm.model.supercontig_48.193 |
| Family | GH28 |
| Protein Properties | Length: 349 Molecular Weight: 39403.8 Isoelectric Point: 8.6846 |
| Chromosome | Chromosome/Scaffold: 48 Start: 1083492 End: 1084709 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 47 | 205 | 5.1e-37 |
| KEACTSPERNKVVIPKSTYMLSQVTLQGPCKAPIEIHVQGTVQATKDSKAFVGLDHWIAFQNINGFTLSGSGTFDGQGESAWDINNCHKTQHCVKLPIGI RFDFITDGVVKDITSLNAKYFHINVLGCKNLVFHHVTITAPETSLNTDGIHLGRSNGVV | |||
| Full Sequence |
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| Protein Sequence Length: 349 Download |
| MSLKTYVGVL FFLALLACNT KADDFFVTKY GAQSGKDIRK ALMNAFKEAC TSPERNKVVI 60 PKSTYMLSQV TLQGPCKAPI EIHVQGTVQA TKDSKAFVGL DHWIAFQNIN GFTLSGSGTF 120 DGQGESAWDI NNCHKTQHCV KLPIGIRFDF ITDGVVKDIT SLNAKYFHIN VLGCKNLVFH 180 HVTITAPETS LNTDGIHLGR SNGVVXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 240 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 300 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXCRSIV* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 2.0e-26 | 27 | 204 | 185 | + polygalacturonase ADPG | ||
| PLN02155 | PLN02155 | 9.0e-29 | 25 | 204 | 186 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 7.0e-29 | 25 | 205 | 188 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 5.0e-41 | 50 | 204 | 155 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 8.0e-45 | 25 | 204 | 182 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABN13878.1 | 0 | 3 | 204 | 1 | 199 | polygalacturonase [Brassica rapa subsp. campestris] |
| EMBL | CAA05892.1 | 0 | 6 | 204 | 4 | 199 | polygalacturonase [Arabidopsis thaliana] |
| RefSeq | NP_187439.1 | 0 | 6 | 204 | 4 | 199 | polygalacturonase 3 (PGA3) / pectinase [Arabidopsis thaliana] |
| RefSeq | NP_187441.1 | 0 | 3 | 204 | 1 | 200 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | XP_002333303.1 | 0 | 15 | 204 | 18 | 207 | predicted protein [Populus trichocarpa] |
| Metabolic Pathways | |||
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| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| FD563349 | 203 | 2 | 204 | 0 |
| FD540823 | 194 | 11 | 204 | 0 |
| EV525732 | 203 | 2 | 204 | 0 |
| DR235157 | 201 | 6 | 204 | 0 |
| FD961987 | 200 | 2 | 201 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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