| Basic Information | |
|---|---|
| Species | Carica papaya |
| Cazyme ID | evm.model.supercontig_486.2 |
| Family | GH28 |
| Protein Properties | Length: 447 Molecular Weight: 48646.3 Isoelectric Point: 7.7163 |
| Chromosome | Chromosome/Scaffold: 486 Start: 15567 End: 19648 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 75 | 420 | 0 |
| RGGTLLYIPPGVYLTESFNLTSHMTLYLARGAVIKAVQYTGNWPLIAPLPSYGRGRELPGGRYMSFIHADGVRDVVITENGTIDGQGDVWWNMWRQRTLQ FTRPNLIEFKNSRSILISNVIFRNSPFWNIHPVYCSNVVIRYVTILAPTDSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGRPSFGIT IRRITGSSPFAGIAIGSETSGGVLNVLAEHINLFDMGVGINVKTNIGRGGVIENITISDVYMENVRTGLKIAGDTGDHPDDKFNPNALPVVKGITIKNVW GVKVQRAGSILGLKDSPFTGICLANVNLHGLTGPRDPTWKCSDVSG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 447 Download |
| MHWLIFSVLF CCSLFAFFSS GSASGEVVTC SGIVPLSYRN DKISITDFGG VGDGRTLNTK 60 AFRAAIYRIQ HLRRRGGTLL YIPPGVYLTE SFNLTSHMTL YLARGAVIKA VQYTGNWPLI 120 APLPSYGRGR ELPGGRYMSF IHADGVRDVV ITENGTIDGQ GDVWWNMWRQ RTLQFTRPNL 180 IEFKNSRSIL ISNVIFRNSP FWNIHPVYCS NVVIRYVTIL APTDSPNTDG IDPDSSSNVC 240 IEDSYISTGD DLVAVKSGWD EYGIAYGRPS FGITIRRITG SSPFAGIAIG SETSGGVLNV 300 LAEHINLFDM GVGINVKTNI GRGGVIENIT ISDVYMENVR TGLKIAGDTG DHPDDKFNPN 360 ALPVVKGITI KNVWGVKVQR AGSILGLKDS PFTGICLANV NLHGLTGPRD PTWKCSDVSG 420 AALKVSPWPC SELASTYYSD SCSDQF* |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| PLN02188 | PLN02188 | 5.0e-23 | 43 | 418 | 393 | + polygalacturonase/glycoside hydrolase family protein |
| PLN03003 | PLN03003 | 2.0e-26 | 40 | 441 | 420 | + Probable polygalacturonase At3g15720 |
| PLN02218 | PLN02218 | 2.0e-29 | 43 | 404 | 373 | + polygalacturonase ADPG |
| pfam00295 | Glyco_hydro_28 | 3.0e-34 | 140 | 418 | 285 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
| COG5434 | PGU1 | 5.0e-57 | 44 | 404 | 391 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACC91250.1 | 0 | 3 | 446 | 2 | 444 | glycoside hydrolase family 28 protein [Arabidopsis halleri] |
| EMBL | CBI34471.1 | 0 | 1 | 443 | 1 | 444 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_194113.1 | 0 | 9 | 446 | 10 | 444 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002304552.1 | 0 | 36 | 446 | 1 | 412 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002509949.1 | 0 | 11 | 446 | 12 | 446 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 1.00053e-42 | 42 | 404 | 27 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 1.00053e-42 | 42 | 404 | 27 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 1.00053e-42 | 42 | 404 | 27 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 1.00053e-42 | 42 | 404 | 27 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 1e-19 | 86 | 339 | 51 | 304 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO782444 | 224 | 220 | 443 | 0 |
| HO782444 | 197 | 26 | 221 | 0 |
| FY431926 | 302 | 31 | 331 | 0 |
| DV710908 | 284 | 26 | 308 | 0 |
| GT172426 | 347 | 92 | 436 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
