| Basic Information | |
|---|---|
| Species | Carica papaya |
| Cazyme ID | evm.model.supercontig_5.270 |
| Family | PL1 |
| Protein Properties | Length: 464 Molecular Weight: 52362.5 Isoelectric Point: 9.23 |
| Chromosome | Chromosome/Scaffold: 5 Start: 2396401 End: 2398766 |
| Description | Pectate lyase family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 184 | 381 | 0 |
| VFKHGMIIQLRQELLITSDKTIDGRGANVQIRNGCGFTLQFVNNVIIHNIHFHHIVPGSGGLVRDSENHYGFRTQSDGDCVSVFGSSNIWIDHVSMSRCA DGMIDVIQGSTGITISNSHFTKHNEVMLFGASDGYSEDAKMQITVAFNHFGKGLVQRMPRCRWGLVHVVNNDYTHWLMYAIGGSSRPTIISQGNRFIA | |||
| Full Sequence |
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| Protein Sequence Length: 464 Download |
| MAGDYRKLIL FLFSLMWFAV IIQETNARVA VIDAEYWRQQ EEVIAKNRTL MAVIDDEYWK 60 QREAIAKNHT VNAYHPRPHE VTDHLNHRVA MAVANHNSSR RSLAAYKGPC EAHNPIDACW 120 RCRRKWARHR FRLADCGMGF GRDTKGGKNG RFYVVTDPSD DDMVNPKPGT LRHAVTRDGP 180 LWIVFKHGMI IQLRQELLIT SDKTIDGRGA NVQIRNGCGF TLQFVNNVII HNIHFHHIVP 240 GSGGLVRDSE NHYGFRTQSD GDCVSVFGSS NIWIDHVSMS RCADGMIDVI QGSTGITISN 300 SHFTKHNEVM LFGASDGYSE DAKMQITVAF NHFGKGLVQR MPRCRWGLVH VVNNDYTHWL 360 MYAIGGSSRP TIISQGNRFI APPNVFAKEV TKRDYALESE WKNWMWRSEN DLFLNGAFFV 420 TSGSVGGANP VPWPNRVPPQ SGKLVSLLTR QAGTLNCQRN QPC* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam04431 | Pec_lyase_N | 2.0e-12 | 55 | 103 | 50 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
| COG3866 | PelB | 9.0e-27 | 144 | 453 | 324 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 6.0e-58 | 195 | 379 | 207 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 2.0e-66 | 189 | 383 | 206 | + Amb_all domain. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0030570 | pectate lyase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN79927.1 | 0 | 56 | 463 | 32 | 439 | hypothetical protein [Vitis vinifera] |
| EMBL | CBI22159.1 | 0 | 56 | 463 | 61 | 468 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002270089.1 | 0 | 56 | 463 | 32 | 443 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002311599.1 | 0 | 56 | 463 | 20 | 429 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002520133.1 | 0 | 56 | 463 | 32 | 440 | Pectate lyase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 114 | 455 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 114 | 455 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 4e-23 | 171 | 370 | 38 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 3e-18 | 194 | 379 | 125 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 1pe9_B | 2e-17 | 192 | 454 | 78 | 358 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO778688 | 387 | 78 | 464 | 0 |
| FG606120 | 332 | 97 | 428 | 0 |
| CO103662 | 281 | 144 | 424 | 0 |
| GR458583 | 277 | 107 | 383 | 0 |
| GT740031 | 303 | 123 | 424 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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