| Basic Information | |
|---|---|
| Species | Carica papaya |
| Cazyme ID | evm.model.supercontig_5.99 |
| Family | GT30 |
| Protein Properties | Length: 455 Molecular Weight: 50667.3 Isoelectric Point: 9.5392 |
| Chromosome | Chromosome/Scaffold: 5 Start: 746627 End: 753844 |
| Description | KDO transferase A |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GT30 | 49 | 229 | 0 |
| HRWPERLGCSSLPRPPTPLLWFHAVSLGEGMAAIPVIKHCNQLRPDLTVLMTTTTLSASEVIRNRLPAGVIHQFAPVDTPKAIDTFLRHWKPNAIVIMEN EIWPNLIMGASNFGIPLALLNARMSVKSFKLWSTPVFLPLISLLLSKFSLIVPLSTMQAIHFQSLQAPPSVINFSGDLKYV | |||
| Full Sequence |
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| Protein Sequence Length: 455 Download |
| MTSASLACMS CPMKGILLYR IYRALTYGLS PLLHLHLRWR KLRGLEHPHR WPERLGCSSL 60 PRPPTPLLWF HAVSLGEGMA AIPVIKHCNQ LRPDLTVLMT TTTLSASEVI RNRLPAGVIH 120 QFAPVDTPKA IDTFLRHWKP NAIVIMENEI WPNLIMGASN FGIPLALLNA RMSVKSFKLW 180 STPVFLPLIS LLLSKFSLIV PLSTMQAIHF QSLQAPPSVI NFSGDLKYVV NENDASEGWI 240 ESAADLEAHF GHRKVWIASS IHKGEEEAIL GVHYELIRMH PDMITIIAPR HPQHGREIAQ 300 ELWNRGQSVS LRSQHKKLNL ETSIYVVDTL GELRDFYKIT PIAVIGGSFV PGLAGHNISE 360 AAAAGCAILT GQHIGHFSHM VLEMQKLNPL SVLQVSSKLE LGEALKELFS NSEVLKARQT 420 AAKQAFHTLS SGIVEKVWNL LNLHVLRRLC LENK* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam04413 | Glycos_transf_N | 2.0e-57 | 47 | 228 | 184 | + 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase). Members of this family transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Members of the family transfer UDP, ADP, GDP or CMP linked sugars. The Glycos_transf_N region is flanked at the N-terminus by a signal peptide and at the C-terminus by Glycos_transf_1 (pfam00534). The eukaryotic glycogen synthases may be distant members of this bacterial family. | ||
| COG1519 | KdtA | 1.0e-100 | 22 | 423 | 407 | + 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane] | ||
| PRK05749 | PRK05749 | 4.0e-109 | 17 | 427 | 416 | + 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005529 | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates." [CHEBI:16646, GOC:mah] |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016740 | transferase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABE80128.2 | 0 | 15 | 426 | 4 | 415 | Three-deoxy-D-manno-octulosonic-acid transferase, N-terminal [Medicago truncatula] |
| RefSeq | NP_195997.2 | 0 | 15 | 447 | 4 | 437 | 3-deoxy-D-manno-octulosonic acid transferase-related [Arabidopsis thaliana] |
| RefSeq | XP_002277784.1 | 0 | 14 | 450 | 5 | 441 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002322900.1 | 0 | 14 | 454 | 7 | 446 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002528642.1 | 0 | 14 | 446 | 9 | 440 | 3-deoxy-d-manno-octulosonic-acid transferase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2xcu_D | 2e-26 | 68 | 421 | 43 | 356 | A Chain A, Crystal Structure Of Chondroitin Polymerase From Escherichia Coli Strain K4 (K4cp) Complexed With Udp-Glcua And Udp |
| PDB | 2xcu_C | 2e-26 | 68 | 421 | 43 | 356 | A Chain A, Crystal Structure Of Chondroitin Polymerase From Escherichia Coli Strain K4 (K4cp) Complexed With Udp-Glcua And Udp |
| PDB | 2xcu_B | 2e-26 | 68 | 421 | 43 | 356 | A Chain A, Crystal Structure Of Chondroitin Polymerase From Escherichia Coli Strain K4 (K4cp) Complexed With Udp-Glcua And Udp |
| PDB | 2xcu_A | 2e-26 | 68 | 421 | 43 | 356 | A Chain A, Crystal Structure Of Chondroitin Polymerase From Escherichia Coli Strain K4 (K4cp) Complexed With Udp-Glcua And Udp |
| PDB | 2xci_D | 2e-26 | 68 | 421 | 43 | 356 | A Chain A, Membrane-Embedded Monofunctional Glycosyltransferase Waaa Of Aquifex Aeolicus, Substrate-Free Form |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| KDO transfer to lipid IVA I | KDOTRANS-RXN | EC-2.4.99.12 | lipid IVA 3-deoxy-D-manno-octulosonic acid transferase |
| KDO transfer to lipid IVA I | KDOTRANS2-RXN | EC-2.4.99.13 | (KDO)-lipid IVA 3-deoxy-D-manno-octulosonic acid transferase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| DY279419 | 388 | 46 | 432 | 0 |
| DY266328 | 361 | 17 | 377 | 0 |
| FC917851 | 304 | 46 | 349 | 0 |
| DY288817 | 374 | 17 | 389 | 0 |
| DY272481 | 327 | 17 | 343 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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