Basic Information | |
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Species | Carica papaya |
Cazyme ID | evm.model.supercontig_50.155 |
Family | GH28 |
Protein Properties | Length: 433 Molecular Weight: 45873.3 Isoelectric Point: 5.673 |
Chromosome | Chromosome/Scaffold: 50 Start: 1443503 End: 1445401 |
Description | polygalacturonase 4 |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 81 | 408 | 0 |
AWDAACNHTGNSTFYVPEGTYLVGPVTFSGPCFNNESPDIKIAGTLIAPTSLTAFPHSSWIVFQNLKEIRLTGATKTPGKLDGQGAVEAWNQISCRKSMR CDQLVTSLKFSNVSKGTISNISLSNSKGFHIGFHGSDNINVHNVNITAPWDSPNTDGIHVSYSSNINITSSSIGVGDDCVSIGPGSVNISVSDTHCGPGH GISVGSLGKYPNEEDVVGISVYNCTISGTQNGVRVKSWPGAPPSHASDMVFANITMINVSNPIVIDQDYCPSNSCNRTNPSFLELKNITFRQISGTYNTK SAVTLLCSNEASCEDIQFVDINLKFTQP |
Full Sequence |
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Protein Sequence Length: 433 Download |
MKRTLPFSLT LVFHLTCSVL VASPAPSPVP ASEFDSPALS PVAPADPPGT EFIPTFGIFD 60 VTEHGAVPDG WTESSAAFSA AWDAACNHTG NSTFYVPEGT YLVGPVTFSG PCFNNESPDI 120 KIAGTLIAPT SLTAFPHSSW IVFQNLKEIR LTGATKTPGK LDGQGAVEAW NQISCRKSMR 180 CDQLVTSLKF SNVSKGTISN ISLSNSKGFH IGFHGSDNIN VHNVNITAPW DSPNTDGIHV 240 SYSSNINITS SSIGVGDDCV SIGPGSVNIS VSDTHCGPGH GISVGSLGKY PNEEDVVGIS 300 VYNCTISGTQ NGVRVKSWPG APPSHASDMV FANITMINVS NPIVIDQDYC PSNSCNRTNP 360 SFLELKNITF RQISGTYNTK SAVTLLCSNE ASCEDIQFVD INLKFTQPES PPQGRFNANG 420 VIHHLLVNNS SF* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 1.0e-61 | 58 | 403 | 352 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 2.0e-68 | 58 | 420 | 365 | + polygalacturonase | ||
PLN02218 | PLN02218 | 5.0e-70 | 61 | 404 | 348 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 2.0e-85 | 86 | 403 | 318 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 2.0e-96 | 58 | 409 | 354 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN69218.1 | 0 | 42 | 406 | 39 | 398 | hypothetical protein [Vitis vinifera] |
EMBL | CAN69218.1 | 0 | 58 | 432 | 489 | 863 | hypothetical protein [Vitis vinifera] |
EMBL | CBI22963.1 | 0 | 58 | 432 | 31 | 405 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002270999.1 | 0 | 58 | 432 | 70 | 444 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002272193.1 | 0 | 49 | 406 | 46 | 398 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 5e-22 | 158 | 406 | 116 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 0.0000000000004 | 234 | 403 | 152 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.0000000000004 | 234 | 403 | 152 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.0000000000004 | 234 | 403 | 152 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 0.0000000000004 | 234 | 403 | 152 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DR930531 | 280 | 90 | 367 | 0 |
DR932296 | 260 | 116 | 373 | 0 |
GR462194 | 274 | 139 | 411 | 0 |
DW091705 | 313 | 92 | 402 | 0 |
GR450321 | 286 | 120 | 405 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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