| Basic Information | |
|---|---|
| Species | Carica papaya |
| Cazyme ID | evm.model.supercontig_51.17 |
| Family | PL1 |
| Protein Properties | Length: 353 Molecular Weight: 39447.9 Isoelectric Point: 9.7612 |
| Chromosome | Chromosome/Scaffold: 51 Start: 215916 End: 217208 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL1 | 71 | 271 | 0 |
| VWISFQRDMRISLQAPLLISSFTAIDGRGASVHIIGPACLLVYKSTDIIIHGLRIHHCRPQPAMSVIGPDSQIMQMGQVDGDAIRLVTARKIWIDHNTLY ECHDGLLDVTRGTTDVTISNNWFRNQDKVMLLGHDDGYLRDKNMKVTVAFNHFGPNCNQRMPRVRHGYAHVVNNLYLGWTQYAIGGSMNPSVKSEANFFI A | |||
| Full Sequence |
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| Protein Sequence Length: 353 Download |
| MNVIDKCWRG NTHWRNNRQQ LGSCSVGFAG KMINNMDPKM VYYEVTDSSD DPLNPKSGSL 60 RYGATVIKGK VWISFQRDMR ISLQAPLLIS SFTAIDGRGA SVHIIGPACL LVYKSTDIII 120 HGLRIHHCRP QPAMSVIGPD SQIMQMGQVD GDAIRLVTAR KIWIDHNTLY ECHDGLLDVT 180 RGTTDVTISN NWFRNQDKVM LLGHDDGYLR DKNMKVTVAF NHFGPNCNQR MPRVRHGYAH 240 VVNNLYLGWT QYAIGGSMNP SVKSEANFFI AVHAQGNKEV TWRKHNKKDK AGWSLYSVRD 300 YFKNGASFTQ SGFGGARPNY DPQQVFQVSD AKSVRVSTES AGALRCTKTS IC* 360 |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 3.0e-27 | 65 | 344 | 302 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 4.0e-56 | 91 | 269 | 187 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 8.0e-66 | 78 | 272 | 206 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI26401.1 | 0 | 32 | 352 | 1 | 320 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002267384.1 | 0 | 1 | 352 | 19 | 369 | PREDICTED: similar to putative Cup s 1 pollen allergen [Vitis vinifera] |
| RefSeq | XP_002299118.1 | 0 | 1 | 352 | 1 | 354 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002304865.1 | 0 | 1 | 352 | 1 | 352 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527354.1 | 0 | 1 | 280 | 29 | 307 | Major pollen allergen Jun v 1 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 2 | 344 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 2 | 344 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1vbl_A | 0.000000000000002 | 87 | 269 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 1jta_A | 0.000000000000006 | 152 | 314 | 144 | 327 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 1jrg_B | 0.000000000000006 | 152 | 314 | 144 | 327 | A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| DR808308 | 255 | 2 | 249 | 0 |
| DT575750 | 226 | 123 | 347 | 0 |
| FD757999 | 215 | 86 | 300 | 0 |
| HO778688 | 354 | 2 | 353 | 0 |
| FG606120 | 313 | 2 | 310 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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