y
Basic Information | |
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Species | Carica papaya |
Cazyme ID | evm.model.supercontig_53.152 |
Family | PL1 |
Protein Properties | Length: 500 Molecular Weight: 53826.8 Isoelectric Point: 6.7231 |
Chromosome | Chromosome/Scaffold: 53 Start: 1249703 End: 1255388 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 131 | 338 | 0 |
AVIQTEPLWIIFSSNMLINLRHELIINSYKTIDGRGANIEITGHGCLTIQDVSHVIIHNIQIHHCKPSGKTMIASSPTHVGFRGVSDGDGISISGSQKIW IDHCSLSYCTDGLIDAIMGSTGITISNSYFSHHDEVMLLGHDDKFLPDSGMQVTIAFNHFGVALVQRMPRCRRGYIHVVNNDFTAWEMYAIGGSANPTIN SQGNRYTA |
Full Sequence |
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Protein Sequence Length: 500 Download |
MFLPTCIFLL FLFSSLSYTT RAAALNLTLP HQHPYPEAVV QDVQRKVNTS VSRRQLFTVQ 60 QHDQSSCLTG NPIDDCWRCD PNWANNRQRL ADCSIGFGHG TLGGKGGKIY IVTDSSDRNP 120 ANPTPGTLRH AVIQTEPLWI IFSSNMLINL RHELIINSYK TIDGRGANIE ITGHGCLTIQ 180 DVSHVIIHNI QIHHCKPSGK TMIASSPTHV GFRGVSDGDG ISISGSQKIW IDHCSLSYCT 240 DGLIDAIMGS TGITISNSYF SHHDEVMLLG HDDKFLPDSG MQVTIAFNHF GVALVQRMPR 300 CRRGYIHVVN NDFTAWEMYA IGGSANPTIN SQGNRYTAPA NPDAKEVTKR VETDENDWAD 360 WNWRTDGDLM VNGAFFVPSG AGLSAQYAKA SSVEPKAAAL INQLTMNAGV WGGTRDKSEG 420 GSYPGFIGGG TGGGGTMNTG GSTNGDRDGD LFGMIFGSGA PPPPAPPAAT TMVLSVLIIL 480 VLYTIITNQG AQHLSLPLL* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 8.0e-24 | 153 | 351 | 210 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 6.0e-58 | 153 | 336 | 206 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 4.0e-67 | 145 | 339 | 206 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_196051.2 | 0 | 4 | 486 | 14 | 512 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | XP_002268818.1 | 0 | 1 | 462 | 1 | 465 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002316399.1 | 0 | 1 | 415 | 1 | 415 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002519460.1 | 0 | 23 | 442 | 22 | 438 | Pectate lyase precursor, putative [Ricinus communis] |
RefSeq | XP_002534016.1 | 0 | 3 | 464 | 4 | 464 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 71 | 410 | 2 | 344 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 71 | 410 | 2 | 344 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 7e-19 | 90 | 336 | 2 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1jta_A | 0.000000000000009 | 96 | 409 | 22 | 357 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1jrg_B | 0.000000000000009 | 96 | 409 | 22 | 357 | A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi |