Basic Information | |
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Species | Carica papaya |
Cazyme ID | evm.model.supercontig_57.18 |
Family | GH28 |
Protein Properties | Length: 436 Molecular Weight: 47834.7 Isoelectric Point: 4.667 |
Chromosome | Chromosome/Scaffold: 57 Start: 339924 End: 343070 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 71 | 374 | 0 |
ADKGGAKLFVPAGRWLTGSFDLISHLTLWLDKDAVILGSLNSDDWPVVDPLPSYGRGRELPGGRHRSLIFGHNLTDVIITGDNGTIDGQGSIWWDWFRNG TLDYTRPHLVELMNSTGVVISNLTFLNSPFWTIHPVYCSHVIVQNVTILAPLDSPNTDGIDPDSSTDVCIEDCYIRTGDDLISIKSGWDEYGISYGRPST NIIIRRLTGQTQSSSGIAIGSEMSGGVSEVYAKDLHFFDSKTGIRFTSNYNEHPDKSFDPNALPIIQAVTIEDIKGDNIGVAGLLEGIEGDKFLDICLLN ITMN |
Full Sequence |
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Protein Sequence Length: 436 Download |
MHPDLVDVLL VIAFLSNAPW AVNGGSNCKY TSSGDIRPHS VTITEFGAVG DGVTLNTKAF 60 QNAIFYLNSF ADKGGAKLFV PAGRWLTGSF DLISHLTLWL DKDAVILGSL NSDDWPVVDP 120 LPSYGRGREL PGGRHRSLIF GHNLTDVIIT GDNGTIDGQG SIWWDWFRNG TLDYTRPHLV 180 ELMNSTGVVI SNLTFLNSPF WTIHPVYCSH VIVQNVTILA PLDSPNTDGI DPDSSTDVCI 240 EDCYIRTGDD LISIKSGWDE YGISYGRPST NIIIRRLTGQ TQSSSGIAIG SEMSGGVSEV 300 YAKDLHFFDS KTGIRFTSNY NEHPDKSFDP NALPIIQAVT IEDIKGDNIG VAGLLEGIEG 360 DKFLDICLLN ITMNVTSKLP WNCSNIQGYS DWVIPEPCGP VNENIFPEHR SDCFHLSNYL 420 RSSANRNRGS WLLSW* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 2.0e-19 | 38 | 291 | 258 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 3.0e-23 | 39 | 264 | 232 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 4.0e-24 | 9 | 398 | 444 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 2.0e-25 | 145 | 394 | 269 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 1.0e-54 | 17 | 351 | 358 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI37055.1 | 0 | 15 | 435 | 17 | 466 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002273855.1 | 0 | 15 | 435 | 68 | 517 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002301554.1 | 0 | 15 | 425 | 17 | 455 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002320934.1 | 0 | 6 | 403 | 1 | 426 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002535132.1 | 0 | 15 | 435 | 27 | 476 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 3e-35 | 39 | 368 | 26 | 405 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 3e-35 | 39 | 368 | 26 | 405 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 3e-35 | 39 | 368 | 26 | 405 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 3e-35 | 39 | 368 | 26 | 405 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 2uvf_B | 0.00000000000002 | 31 | 260 | 147 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FE681628 | 306 | 11 | 316 | 0 |
CV884789 | 271 | 5 | 275 | 0 |
CO090976 | 246 | 69 | 314 | 0 |
GO869614 | 315 | 5 | 318 | 0 |
FE681629 | 265 | 4 | 268 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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