| Basic Information | |
|---|---|
| Species | Carica papaya |
| Cazyme ID | evm.model.supercontig_59.92 |
| Family | PL1 |
| Protein Properties | Length: 376 Molecular Weight: 41470.6 Isoelectric Point: 8.8263 |
| Chromosome | Chromosome/Scaffold: 59 Start: 799127 End: 800952 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 88 | 295 | 0 |
| VIQDKPLWIVFKRDMVIQLKQELIMNSFKTIDGRGANVHIANGACITIQFVTNVIIHGLHIHDCKPTGNAMVRSSPTHFGWRTMADGDAISIFGSSHIWV DHNSLSNCADGLVDAVMGSTAITISNNHFTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINS QGNRYNAP | |||
| Full Sequence |
|---|
| Protein Sequence Length: 376 Download |
| MDLFPDPSAR NHTERRKLGY FSCGTGNPID DCWRCDANWQ KNRKRLADCG IGFGRNAVGG 60 RDGRFYVVTD PRDDDPVNPK PGTLRHAVIQ DKPLWIVFKR DMVIQLKQEL IMNSFKTIDG 120 RGANVHIANG ACITIQFVTN VIIHGLHIHD CKPTGNAMVR SSPTHFGWRT MADGDAISIF 180 GSSHIWVDHN SLSNCADGLV DAVMGSTAIT ISNNHFTHHN EVMLLGHSDS YTRDKQMQVT 240 IAYNHFGEGL IQRMPRCRHG YFHVVNNDYT HWEMYAIGGS ANPTINSQGN RYNAPANPFA 300 KEVTKRVETA ASQWKSWNWR SEGDLLLNGA YFTPSGAGAS ASYARASSLG AKSSSMVGTI 360 TSNAGALPCR RGRQC* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 1.0e-28 | 114 | 290 | 189 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 2.0e-73 | 107 | 292 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 2.0e-82 | 101 | 295 | 206 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAK66161.1 | 0 | 8 | 375 | 1 | 368 | pectate lyase [Fragaria x ananassa] |
| GenBank | ADD62392.1 | 0 | 6 | 375 | 76 | 445 | pectase lyase [Prunus persica] |
| DDBJ | BAF43573.1 | 0 | 6 | 375 | 56 | 425 | pectate lyase [Prunus persica] |
| EMBL | CBI33346.1 | 0 | 6 | 375 | 61 | 430 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002297822.1 | 0 | 8 | 375 | 83 | 450 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 27 | 367 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 27 | 367 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 3e-17 | 96 | 292 | 50 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 0.000000000000006 | 117 | 292 | 135 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 1pe9_B | 0.00000000000002 | 117 | 366 | 90 | 358 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO778688 | 369 | 8 | 376 | 0 |
| CK262438 | 320 | 37 | 356 | 0 |
| ES827871 | 315 | 62 | 376 | 0 |
| DT556743 | 303 | 74 | 376 | 0 |
| EC964189 | 308 | 69 | 376 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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