Basic Information | |
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Species | Carica papaya |
Cazyme ID | evm.model.supercontig_64.6 |
Family | GH28 |
Protein Properties | Length: 320 Molecular Weight: 35102.3 Isoelectric Point: 9.5391 |
Chromosome | Chromosome/Scaffold: 64 Start: 19444 End: 20686 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 2 | 309 | 0 |
GGGVIYVPKGRYLLGPLEFTRDKCKTNDITFRIDGTLVAPPDYRLLLQSETWLSFHQVTGVSIVGGKFDAKGSDLWACKTARGNCYDQGATTLSFTNSKN IRMKGVLSLNSQMFHIVINRCENVKVEEVKIIAAANSPNTDGIHVQQSKNVIIFNASIKTGDDCISMGPGANSLWIERVTCGPGHGISIGSLAKYAEEEG VENVTVKGTVFAGTTNGLRIKSWARPSTGFVRGIRFTDARMQYVKNPIIIDQNYCPHYLNCPKQGSNVKIRDITYKNIRGISTTPLAVTFNCSPSSPCTG IRMQNINL |
Full Sequence |
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Protein Sequence Length: 320 Download |
MGGGVIYVPK GRYLLGPLEF TRDKCKTNDI TFRIDGTLVA PPDYRLLLQS ETWLSFHQVT 60 GVSIVGGKFD AKGSDLWACK TARGNCYDQG ATTLSFTNSK NIRMKGVLSL NSQMFHIVIN 120 RCENVKVEEV KIIAAANSPN TDGIHVQQSK NVIIFNASIK TGDDCISMGP GANSLWIERV 180 TCGPGHGISI GSLAKYAEEE GVENVTVKGT VFAGTTNGLR IKSWARPSTG FVRGIRFTDA 240 RMQYVKNPII IDQNYCPHYL NCPKQGSNVK IRDITYKNIR GISTTPLAVT FNCSPSSPCT 300 GIRMQNINLI RWLNHHVQI* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 1.0e-69 | 2 | 309 | 314 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 6.0e-73 | 6 | 310 | 311 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 2.0e-80 | 5 | 309 | 309 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 4.0e-85 | 8 | 309 | 307 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 2.0e-107 | 6 | 309 | 304 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAP21998.1 | 0 | 5 | 309 | 33 | 335 | endopolygalacturonase [Prunus persica] |
EMBL | CBI23356.1 | 0 | 5 | 309 | 56 | 360 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002262690.1 | 0 | 5 | 309 | 66 | 370 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002315106.1 | 0 | 5 | 318 | 66 | 377 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002524365.1 | 0 | 5 | 309 | 57 | 359 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 6e-23 | 94 | 309 | 154 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 0.0000000000003 | 66 | 255 | 77 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 0.0000000000003 | 66 | 255 | 77 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 0.0000000000003 | 66 | 255 | 77 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 0.0000000000003 | 66 | 255 | 77 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DY281549 | 280 | 6 | 285 | 0 |
JZ194028 | 278 | 32 | 309 | 0 |
JZ192621 | 270 | 25 | 294 | 0 |
JZ195553 | 269 | 25 | 293 | 0 |
JZ195837 | 274 | 33 | 306 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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