| Basic Information | |
|---|---|
| Species | Carica papaya |
| Cazyme ID | evm.model.supercontig_677.3 |
| Family | AA7 |
| Protein Properties | Length: 516 Molecular Weight: 57628 Isoelectric Point: 7.1105 |
| Chromosome | Chromosome/Scaffold: 677 Start: 4231 End: 5778 |
| Description | FAD-binding Berberine family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA7 | 47 | 503 | 0 |
| NLRFTSPSTPKPLFVVTPVHVSHVQASIICAKLHGLELRIRSGGHDYDGLSYVSTSPFIVLDMFNLRSVRVDLEDESVWVESGATLGELFYSIAEKSKIH GFPAGVCPTVGVGGHFSGGGYGNLMRKFGLSTDNVIDATIVDANGRVLNRKSMGEDLFWAIRGGGGASFGVILSWKIKLVPVPEIVTVFRVERTLEQGAT DIVHQWQIVAPNIHQDLFIRVVLLPVTRKNNETIKAKFVALFLGNAQELMGLIDSKFPELGLSKDDCIEMSWAESVLFWDNHPKGTSMENLLDRQPKSVK FLKKKSDYVVEPISKTDLEGIFKKMIESRKPALTLNPYGGKMSEISELETPFPHRAGNIYKIQYSVTWKEETAEAEDTNLGLIRKLYDYMTPYVSKNPRS AYLNYRDIDLGVNENGNASYSKARIWGEKYFNKNFDRLVQVKTMVDPGNFFRYEQSI | |||
| Full Sequence |
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| Protein Sequence Length: 516 Download |
| MGSSDPVQEV LLQCLSAHST PNPPISQVVF FPDNPNYPSV LQAYIRNLRF TSPSTPKPLF 60 VVTPVHVSHV QASIICAKLH GLELRIRSGG HDYDGLSYVS TSPFIVLDMF NLRSVRVDLE 120 DESVWVESGA TLGELFYSIA EKSKIHGFPA GVCPTVGVGG HFSGGGYGNL MRKFGLSTDN 180 VIDATIVDAN GRVLNRKSMG EDLFWAIRGG GGASFGVILS WKIKLVPVPE IVTVFRVERT 240 LEQGATDIVH QWQIVAPNIH QDLFIRVVLL PVTRKNNETI KAKFVALFLG NAQELMGLID 300 SKFPELGLSK DDCIEMSWAE SVLFWDNHPK GTSMENLLDR QPKSVKFLKK KSDYVVEPIS 360 KTDLEGIFKK MIESRKPALT LNPYGGKMSE ISELETPFPH RAGNIYKIQY SVTWKEETAE 420 AEDTNLGLIR KLYDYMTPYV SKNPRSAYLN YRDIDLGVNE NGNASYSKAR IWGEKYFNKN 480 FDRLVQVKTM VDPGNFFRYE QSIPSIAAWE GKMAE* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02805 | PLN02805 | 0.004 | 58 | 230 | 182 | + D-lactate dehydrogenase [cytochrome] | ||
| TIGR01678 | FAD_lactone_ox | 0.0008 | 57 | 275 | 223 | + sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1. | ||
| pfam08031 | BBE | 1.0e-17 | 447 | 504 | 58 | + Berberine and berberine like. This domain is found in the berberine bridge and berberine bridge- like enzymes which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyze the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine. | ||
| COG0277 | GlcD | 1.0e-18 | 38 | 498 | 485 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
| pfam01565 | FAD_binding_4 | 2.0e-20 | 58 | 195 | 139 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
| GO:0016491 | oxidoreductase activity |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN72775.1 | 0 | 4 | 515 | 24 | 509 | hypothetical protein [Vitis vinifera] |
| EMBL | CBI31067.1 | 0 | 4 | 515 | 24 | 517 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002268682.1 | 0 | 4 | 515 | 24 | 535 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002300580.1 | 0 | 1 | 512 | 1 | 512 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002523156.1 | 0 | 1 | 508 | 1 | 509 | Reticuline oxidase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 4dns_B | 0 | 7 | 506 | 9 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 4dns_A | 0 | 7 | 506 | 9 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3vte_A | 0 | 8 | 506 | 4 | 513 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
| PDB | 3tsj_B | 0 | 7 | 506 | 7 | 496 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
| PDB | 3tsj_A | 0 | 7 | 506 | 7 | 496 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| cannabinoid biosynthesis | RXN-7854 | EC-1.21.3 | tetrahydrocannabinolic acid synthase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO777438 | 521 | 3 | 510 | 0 |
| DY290183 | 331 | 90 | 420 | 0 |
| DY262774 | 379 | 125 | 498 | 0 |
| JK988562 | 307 | 19 | 323 | 0 |
| HO781153 | 348 | 169 | 508 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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