Basic Information | |
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Species | Carica papaya |
Cazyme ID | evm.model.supercontig_69.65 |
Family | GH28 |
Protein Properties | Length: 528 Molecular Weight: 57514.4 Isoelectric Point: 8.5608 |
Chromosome | Chromosome/Scaffold: 69 Start: 759309 End: 763470 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 136 | 481 | 0 |
ASACKVEASTVIVPAEYVFLVGPISFSGPYCQPNIVFQLDGTVIAPIDNKPWGKGLLQWLEFTKLRGITIQGSGIIDGRGSVWWQYYPFDDPIDDESKLI IPLNNTVQEHPPMPVRNELNGKMPSIKPTALRFYGSFNATVTGITIRNSPQCHLKFDNCVGVLVHNISISSPGDSPNTDGIHLQNSKDVLIHGTNLACGD DCVSIQTGCSNVYIHNVNCGPGHGISIGSLGRYNTKACVSNITVRDIVMHNTMNGVRIKTWQGGSGSVQGVLFSNIQVSEVQLPIVIDQFYCDKSTCKNQ TSAVALSGITYEKIRGTYTVKPVHFACSDSLPCTDVNLAAIELKPL |
Full Sequence |
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Protein Sequence Length: 528 Download |
MSGFSARSIT FMLFIAFLVW SSSFDTCIAR RGRHWRQTRS SSVSLYKKKG KNHSNHHHNV 60 KSKSKSSPHK APSPPLSRKA PSPPPPNNPK DDDIPPPPPQ KGYGSPSRSS VFNVLDFGAK 120 GNGNTDDTKA FQAAWASACK VEASTVIVPA EYVFLVGPIS FSGPYCQPNI VFQLDGTVIA 180 PIDNKPWGKG LLQWLEFTKL RGITIQGSGI IDGRGSVWWQ YYPFDDPIDD ESKLIIPLNN 240 TVQEHPPMPV RNELNGKMPS IKPTALRFYG SFNATVTGIT IRNSPQCHLK FDNCVGVLVH 300 NISISSPGDS PNTDGIHLQN SKDVLIHGTN LACGDDCVSI QTGCSNVYIH NVNCGPGHGI 360 SIGSLGRYNT KACVSNITVR DIVMHNTMNG VRIKTWQGGS GSVQGVLFSN IQVSEVQLPI 420 VIDQFYCDKS TCKNQTSAVA LSGITYEKIR GTYTVKPVHF ACSDSLPCTD VNLAAIELKP 480 LQQAYHLYEP FCWQTFGELN TPTVPPIACL QIGKPSRNGV QSDQDIC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 2.0e-78 | 112 | 478 | 372 | + polygalacturonase | ||
PLN02188 | PLN02188 | 4.0e-83 | 107 | 479 | 378 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02218 | PLN02218 | 7.0e-86 | 110 | 479 | 374 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 3.0e-87 | 143 | 478 | 337 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 7.0e-105 | 106 | 510 | 410 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK95830.1 | 0 | 1 | 527 | 4 | 516 | unknown [Populus trichocarpa] |
RefSeq | NP_564758.2 | 0 | 4 | 527 | 7 | 539 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002266600.1 | 0 | 1 | 527 | 1 | 505 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311773.1 | 0 | 1 | 527 | 4 | 517 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002525361.1 | 0 | 1 | 527 | 1 | 519 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-23 | 188 | 429 | 96 | 317 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 3jur_D | 6e-22 | 113 | 426 | 29 | 362 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 6e-22 | 113 | 426 | 29 | 362 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 6e-22 | 113 | 426 | 29 | 362 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 6e-22 | 113 | 426 | 29 | 362 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
ES800057 | 351 | 150 | 499 | 0 |
FE695613 | 286 | 217 | 502 | 0 |
GO844129 | 350 | 119 | 468 | 0 |
DW141437 | 288 | 192 | 478 | 0 |
EX073104 | 286 | 144 | 428 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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