Basic Information | |
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Species | Carica papaya |
Cazyme ID | evm.model.supercontig_69.66 |
Family | GH28 |
Protein Properties | Length: 410 Molecular Weight: 44180 Isoelectric Point: 5.1336 |
Chromosome | Chromosome/Scaffold: 69 Start: 772589 End: 775422 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 124 | 354 | 0 |
ALTIDSSSAVKVKGLAIQNSQQMHFTISRSTAVRVSGIKVTAPGDSPNTDGIHITGSTGVTLQDCKIGTGDDCISIVNGSSAIKMKRIYCGPGHGVSIGS LGKDNSTGTVTKVVLDTAFLRETTNGLRIKTWQGGSGYVRGVRFENVRMDDVANPIVIDQFYCDSPKACQNLTSAVEISQILYRNVSGTTSSSKAMKFAC SNTVPCSNIVLSNINLERKDGSVETYCNSAQ |
Full Sequence |
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Protein Sequence Length: 410 Download |
MGKLFVVSIF CLLIPAYGVA GNLLYDSIDM LWEFENLDVA EEAEEELFDV PSWTSRSAKK 60 GFLNVDDFGA VGDGVSDDTQ AFVKAWNTAC STPESVFLVP PGRRYLVKAT RFRGPCADRL 120 IIQALTIDSS SAVKVKGLAI QNSQQMHFTI SRSTAVRVSG IKVTAPGDSP NTDGIHITGS 180 TGVTLQDCKI GTGDDCISIV NGSSAIKMKR IYCGPGHGVS IGSLGKDNST GTVTKVVLDT 240 AFLRETTNGL RIKTWQGGSG YVRGVRFENV RMDDVANPIV IDQFYCDSPK ACQNLTSAVE 300 ISQILYRNVS GTTSSSKAMK FACSNTVPCS NIVLSNINLE RKDGSVETYC NSAQGFGYGV 360 VHPAADCLTS NDKDKEYSIT KLSENNELVE LVKEDIGMPN RNEIIHTEL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 4.0e-15 | 63 | 131 | 70 | + polygalacturonase ADPG | ||
PLN03010 | PLN03010 | 5.0e-66 | 64 | 344 | 332 | + polygalacturonase | ||
PLN02218 | PLN02218 | 6.0e-73 | 124 | 363 | 240 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 4.0e-73 | 122 | 340 | 219 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 4.0e-103 | 51 | 371 | 390 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAC98004.1 | 0 | 14 | 387 | 15 | 451 | Similar to gb |
RefSeq | XP_002299032.1 | 0 | 16 | 409 | 16 | 469 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002317091.1 | 0 | 30 | 409 | 1 | 447 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002328587.1 | 0 | 1 | 374 | 1 | 439 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002525360.1 | 0 | 1 | 409 | 1 | 510 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 9e-17 | 125 | 285 | 154 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 3e-16 | 134 | 358 | 139 | 358 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1hg8_A | 4e-16 | 120 | 335 | 106 | 327 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 2iq7_G | 6e-16 | 135 | 339 | 113 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 6e-16 | 135 | 339 | 113 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |