Basic Information | |
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Species | Carica papaya |
Cazyme ID | evm.model.supercontig_69.86 |
Family | GH28 |
Protein Properties | Length: 481 Molecular Weight: 52367.2 Isoelectric Point: 5.0898 |
Chromosome | Chromosome/Scaffold: 69 Start: 985743 End: 988115 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 91 | 421 | 0 |
TACSISKSVFLVPPGRRYLVNATRFKGPCEDRLVVQIDGTIVAPDEPENWDPKFSRNWLDFSNLQRVIFQGNGVIDGSGSKWWADSCKTNKSNPCRGAPT ALTIDSSSAIKVKGLTIQNSQQMHFVISRSAAVRVSGVKVSAPGNSPNTDGIHITASTGITLQDCKIGTGDDCISIVNGSSAIKMKRIYCGPGHGVSIGS LGKDNSTGIVTKVVLDTAFLRETTNGLRIKTWQGGSGYVRGVRFENVRMDDVANPIIIDQFYCDSPKSCENRTSAVEISQIMYRNISGTTSSSKAMKFAC SDTVPCSNIVLTNINLERKDGTVETYCNSAQ |
Full Sequence |
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Protein Sequence Length: 481 Download |
MGKLLMVIYI LGLLMIAATY GVAGNLLHDD IEMLWELENL EIVEDEEVEL FDIPAWISGR 60 GNKVLVNVDS FGAVGDGVSD DTQAFEKAWK TACSISKSVF LVPPGRRYLV NATRFKGPCE 120 DRLVVQIDGT IVAPDEPENW DPKFSRNWLD FSNLQRVIFQ GNGVIDGSGS KWWADSCKTN 180 KSNPCRGAPT ALTIDSSSAI KVKGLTIQNS QQMHFVISRS AAVRVSGVKV SAPGNSPNTD 240 GIHITASTGI TLQDCKIGTG DDCISIVNGS SAIKMKRIYC GPGHGVSIGS LGKDNSTGIV 300 TKVVLDTAFL RETTNGLRIK TWQGGSGYVR GVRFENVRMD DVANPIIIDQ FYCDSPKSCE 360 NRTSAVEISQ IMYRNISGTT SSSKAMKFAC SDTVPCSNIV LTNINLERKD GTVETYCNSA 420 QGFGYGVVRP TADCLNSHDN KDKTYYSVTQ QFENDYQLIK PVEEDTLLSS SKDEIIHTEL 480 * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 5.0e-90 | 57 | 411 | 358 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03003 | PLN03003 | 1.0e-92 | 66 | 407 | 347 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 1.0e-93 | 94 | 407 | 314 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 8.0e-116 | 66 | 430 | 368 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 6.0e-147 | 54 | 452 | 403 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_173760.2 | 0 | 20 | 447 | 19 | 450 | polygalacturonase [Arabidopsis thaliana] |
RefSeq | XP_002299032.1 | 0 | 21 | 480 | 18 | 469 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002317091.1 | 0 | 33 | 480 | 1 | 447 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002328587.1 | 0 | 5 | 438 | 4 | 436 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002525360.1 | 0 | 5 | 480 | 4 | 510 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 3e-20 | 161 | 352 | 115 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 2e-18 | 58 | 425 | 13 | 358 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 2iq7_G | 3e-17 | 165 | 398 | 80 | 311 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 3e-17 | 165 | 398 | 80 | 311 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 3e-17 | 165 | 398 | 80 | 311 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |