Basic Information | |
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Species | Carica papaya |
Cazyme ID | evm.model.supercontig_733.1 |
Family | GH28 |
Protein Properties | Length: 559 Molecular Weight: 59847.7 Isoelectric Point: 6.4934 |
Chromosome | Chromosome/Scaffold: 733 Start: 11918 End: 14110 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 186 | 513 | 0 |
AACSSQNDSAVILVPSGFSFLIQSTIFTGPCQGGLVLQIDGTVMPPDGPESWPKNLSRRQWLVFYRINQMSLRGGGVIDGRGQKWWDLPCKPHKGVNGTT LPGPCDSPIAIKFFMSSNLSVQGLKVKNSPQFHFRFDNCKNVHIESLRITAPALSPNTDGIHIENTNNVQIYNSAISNGDDCVSIGSGCYDVDIKNVTCG PSHGISIGSLGNHNSRACVSNITVRDSVIRLSANGVRIKTWQGGSGAVSGVTFSNIHMENVRNPIIIDQFYCLTKGCANKTSAVLVSDIQYESIKGTYDI RSPPMHFGCSDSVPCTNLTLSDIELMPA |
Full Sequence |
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Protein Sequence Length: 559 Download |
MLHCRLSQLF LCIIICFFVC SSHGRHHHTK HKHTHGHHKV SYISEPPSYL PPESALSPDD 60 PPTPEVTVPP PFEATTPPPF DATAPPPFKP TAPPPFKATA PPPFEATAPP PNPTTTSPPP 120 TAPPPNPPTT SPPPKASAPA PEASAPSPSD NVNDNYSSGI FDVRRFGAVG DGVTDDTEAF 180 KLAWDAACSS QNDSAVILVP SGFSFLIQST IFTGPCQGGL VLQIDGTVMP PDGPESWPKN 240 LSRRQWLVFY RINQMSLRGG GVIDGRGQKW WDLPCKPHKG VNGTTLPGPC DSPIAIKFFM 300 SSNLSVQGLK VKNSPQFHFR FDNCKNVHIE SLRITAPALS PNTDGIHIEN TNNVQIYNSA 360 ISNGDDCVSI GSGCYDVDIK NVTCGPSHGI SIGSLGNHNS RACVSNITVR DSVIRLSANG 420 VRIKTWQGGS GAVSGVTFSN IHMENVRNPI IIDQFYCLTK GCANKTSAVL VSDIQYESIK 480 GTYDIRSPPM HFGCSDSVPC TNLTLSDIEL MPAQGDIMLD PFCWNAYGDL QTLTIPPVSC 540 LMEGTPSSSL LDSVIGYC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 2.0e-82 | 157 | 541 | 391 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 2.0e-86 | 151 | 537 | 391 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 3.0e-92 | 195 | 510 | 316 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 5.0e-98 | 163 | 510 | 351 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 6.0e-124 | 157 | 537 | 383 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI37004.1 | 0 | 157 | 558 | 85 | 484 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002272733.1 | 0 | 157 | 558 | 66 | 456 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002302793.1 | 0 | 157 | 558 | 65 | 457 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002320271.1 | 0 | 157 | 558 | 39 | 438 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515219.1 | 0 | 1 | 558 | 1 | 537 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 8e-27 | 225 | 514 | 41 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 8e-27 | 225 | 514 | 41 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 8e-27 | 225 | 514 | 41 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 8e-27 | 225 | 514 | 41 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 8e-27 | 225 | 514 | 41 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DW479564 | 326 | 165 | 490 | 0 |
DR450143 | 293 | 207 | 499 | 0 |
DY277859 | 360 | 155 | 511 | 0 |
CX663441 | 284 | 273 | 556 | 0 |
DV135481 | 289 | 170 | 458 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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