Basic Information | |
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Species | Carica papaya |
Cazyme ID | evm.model.supercontig_74.20 |
Family | GT47 |
Protein Properties | Length: 523 Molecular Weight: 59918 Isoelectric Point: 7.571 |
Chromosome | Chromosome/Scaffold: 74 Start: 198409 End: 200037 |
Description | root hair specific 8 |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 130 | 461 | 0 |
SCNGKGVYVYDLPSKFNKDLVGQCSDMIIWTDFCRFFKNNALGEPIEELGKGWYHTHQYALEPIFHARVLKHPCRVYDENQAKLFYVPYYGGFDILRWHF KNVSNEVKDSLTLELMKWLESRKPWMKNSGKDHVFVLGKITWDFRRNNLSSWGTRLLELEEMKNPIKLLIERHPWEINDIGIPHPTFFHPHSDDEVISWQ LKIMRSNRKTLVSFAGGARPNDPENIRSILINQCNGSNSSAETNGRCRLFSCKAGGCNHPGSVMTLFMESEFCLQPPGDSATRKSVFDSLISGCIPVLFN PFTAYYQYPWHLPEDYEKYSVLIDQDDVRKMK |
Full Sequence |
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Protein Sequence Length: 523 Download |
MAISVSKRKP RLPSKSKDEA YEVHHQHHSS IIFLWSSSTT IISGKIVHVC LSSRKLNNLY 60 CLSAGSQPGF NIPVDVPLSS NNNSTSTVST SIVDGDDDDD DVATAIRSVE EQLKVHRSFV 120 SNNNYNEANS CNGKGVYVYD LPSKFNKDLV GQCSDMIIWT DFCRFFKNNA LGEPIEELGK 180 GWYHTHQYAL EPIFHARVLK HPCRVYDENQ AKLFYVPYYG GFDILRWHFK NVSNEVKDSL 240 TLELMKWLES RKPWMKNSGK DHVFVLGKIT WDFRRNNLSS WGTRLLELEE MKNPIKLLIE 300 RHPWEINDIG IPHPTFFHPH SDDEVISWQL KIMRSNRKTL VSFAGGARPN DPENIRSILI 360 NQCNGSNSSA ETNGRCRLFS CKAGGCNHPG SVMTLFMESE FCLQPPGDSA TRKSVFDSLI 420 SGCIPVLFNP FTAYYQYPWH LPEDYEKYSV LIDQDDVRKM KVNVVKRLMN VPLKEREDMR 480 RYIVYELLPG LVYGDSDSQF QRFQDAFSIT MNNLLGRVSR LE* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 2.0e-59 | 133 | 471 | 354 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI34680.1 | 0 | 1 | 522 | 456 | 993 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_176534.2 | 0 | 100 | 520 | 247 | 662 | catalytic [Arabidopsis thaliana] |
RefSeq | XP_002269913.1 | 0 | 1 | 522 | 1 | 538 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002299537.1 | 0 | 1 | 522 | 1 | 573 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002509789.1 | 0 | 46 | 522 | 59 | 567 | Xyloglucan galactosyltransferase KATAMARI1, putative [Ricinus communis] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FC346433 | 256 | 214 | 468 | 0 |
FC451292 | 245 | 213 | 456 | 0 |
CF668912 | 285 | 241 | 521 | 0 |
FC340904 | 245 | 133 | 367 | 0 |
DY265125 | 328 | 137 | 451 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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